Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

8867640 .. 8869211

Gene Structure 1572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0103900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTATTCCAGTGATTGATCTGAATCAATTTCCAGACTCTGAAGAGTACAAAAAACTGAGGGAAGCATCAGAGGAATGGGGTTGCTTCAGGCTAGTCAACCACAAGATCCCATTGTCTCTCATGTCAGAGATGAAGATGGTGGTCAGATCTCTTCTTGATCTGCCCATGGAGATTAAGAAGAACAACACTGATGTCATAGCTGGCAGTGGCTACATGGCGCCCAGCAAGGTCAACCCTCTCTATGAGGCTTTGGGTCTCTATGACTTGGGATCATCTCAGGCTGTGCAGACCTTTTGCTCTCAGTTGGATGCTTCTTCCTACCAGAGAGAGGTGATAGAGAAGTATGCAGGAGCAATTTATGAGCAGATAGTGGATATAGGGCATAAGTTGGCAGAGAGTCTCGGTTTGAAGACCGGTTTTCTTAATGGGTGGCCTTGCCAGTTCAGGATAAACAAGTATAATTTCACTCCTGAATCCGTTGGATCTTGCGGAGTTCAGATGCACACAGATTCGAGTTTTCTGACAATTCTTCAAGATGATGAAAATGTTGGAGGTCTTGAAGTGATGAGCAAGTCTGGTGCTTTTGTACCAGTTGATCCTTGTCCAGGCACTCTCGTTGTCAATCTTGGAGACATTGCTAAGGCTTGGAGCAATGGGAGGCTGTGCAATTTGAAGCACAGAGTTCAATGCAGGGAGGCCACCATTCGAGTCTCCATTGCTACCTTTCTGTTGGGACCAAAGGAGGAAGCATTGGAAGCTCCTCCAGAATTTGTTGATTCGGAGCATCCGCGTCTCTATGTCCCTTTCACTTATGATGATTTCAGAAAGCTCAGAGTCTCCAAAAAATTGCATGCTGGTGAAGCTCTAGAACTTGTGCGCATCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

297

Amino Acids

33.13

Weight (kDa)

5.62

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 73	2.9e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	147 - 244	6.7e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	881
AccB1I	GGYRCC	1 cut(s)	220
AccII	CGCG	1 cut(s)	793
AciI	CCGC	2 cut(s)	492, 791
AclWI	GGATC	4 cut(s)	103, 280, 493, 593
AcsI	RAATTY	1 cut(s)	770
AcuI	CTGAAG	2 cut(s)	63, 73
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	50, 591
AfiI	CCNNNNNNNGG	2 cut(s)	331, 608
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	5 cut(s)	412, 536, 563, 676, 689
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	4 cut(s)	203, 761, 832, 866
AluI	AGCT	4 cut(s)	203, 761, 832, 866
Alw26I	GTCTC	7 cut(s)	123, 263, 407, 627, 718, 800, 844
AlwI	GGATC	4 cut(s)	103, 280, 493, 593
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	434, 699
ApoI	RAATTY	1 cut(s)	770
AsiGI	ACCGGT	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	223, 882
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	346, 872
AvaII	GGWCC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	419
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	7 cut(s)	123, 263, 407, 627, 718, 800, 844
BfaI	CTAG	2 cut(s)	95, 869
BfoI	RGCGCY	1 cut(s)	224
BglII	AGATCT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	222, 738
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	4 cut(s)	77, 301, 492, 796
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 608
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	11, 442, 593
Bse3DI	GCAATG	3 cut(s)	636, 661, 717
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	316, 787
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	331, 608
BseMI	GCAATG	3 cut(s)	636, 661, 717
BseMII	CTCAG	4 cut(s)	50, 293, 317, 847
BseNI	ACTGG	3 cut(s)	11, 442, 593
BseRI	GAGGAG	1 cut(s)	753
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	2 cut(s)	436, 701
BshNI	GGYRCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	2 cut(s)	750, 788
BslI	CCNNNNNNNGG	2 cut(s)	331, 608
BsmAI	GTCTC	7 cut(s)	123, 263, 407, 627, 718, 800, 844
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	750, 788
BsnI	GGCC	2 cut(s)	436, 701
Bso31I	GGTCTC	1 cut(s)	263
Bsp143I	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	492, 791
BspANI	GGCC	2 cut(s)	436, 701
BspCNI	CTCAG	4 cut(s)	51, 292, 316, 846
BspFNI	CGCG	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	222, 738
BspPI	GGATC	4 cut(s)	103, 280, 493, 593
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	636, 661, 717
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	11, 442, 593
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	39, 159
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	205, 855
BstDEI	CTNAG	5 cut(s)	59, 279, 303, 642, 833
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	316, 787
BstFNI	CGCG	1 cut(s)	793
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	223, 882
BstKTI	GATC	7 cut(s)	22, 111, 152, 163, 275, 488, 601
BstMAI	GTCTC	7 cut(s)	123, 263, 407, 627, 718, 800, 844
BstMBI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 863
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	607
BstUI	CGCG	1 cut(s)	793
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	3 cut(s)	108, 149, 485
BstYI	RGATCY	3 cut(s)	108, 149, 485
BsuRI	GGCC	2 cut(s)	436, 701
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	316, 787
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	18, 189, 214
Cac8I	GCNNGC	2 cut(s)	205, 855
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	2 cut(s)	223, 882
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	737
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	2 cut(s)	49, 590
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	4 cut(s)	124, 169, 217, 854
CviQI	GTAC	2 cut(s)	49, 590
DdeI	CTNAG	5 cut(s)	59, 279, 303, 642, 833
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	7 cut(s)	21, 110, 151, 162, 274, 487, 600
DpnII	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
Eam1104I	CTCTTC	2 cut(s)	39, 159
EarI	CTCTTC	2 cut(s)	39, 159
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	2 cut(s)	63, 73
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	800
FaeI	CATG	4 cut(s)	127, 172, 220, 857
FaqI	GGGAC	2 cut(s)	750, 788
FatI	CATG	4 cut(s)	123, 168, 216, 853
FokI	GGATG	2 cut(s)	323, 774
FspAI	RTGCGCAY	1 cut(s)	881
FspBI	CTAG	2 cut(s)	95, 869
FspI	TGCGCA	1 cut(s)	881
GlaI	GCGC	2 cut(s)	222, 881
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	436, 701
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	2 cut(s)	223, 882
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	127, 172, 220, 857
Hin6I	GCGC	2 cut(s)	221, 880
HinP1I	GCGC	2 cut(s)	221, 880
HincII	GTYRAC	2 cut(s)	100, 235
HindII	GTYRAC	2 cut(s)	100, 235
HinfI	GANTC	8 cut(s)	25, 38, 400, 476, 512, 711, 779, 837
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	2 cut(s)	346, 872
Hpy166II	GTNNAC	2 cut(s)	100, 235
Hpy188III	TCNNGA	8 cut(s)	35, 158, 448, 473, 536, 560, 767, 869
Hpy8I	GTNNAC	2 cut(s)	100, 235
HpyCH4V	TGCA	6 cut(s)	289, 350, 505, 669, 693, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 863
HpyF3I	CTNAG	5 cut(s)	59, 279, 303, 642, 833
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	127, 172, 220, 857
HspAI	GCGC	2 cut(s)	221, 880
KasI	GGCGCC	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
LmnI	GCTCC	4 cut(s)	353, 651, 766, 784
LweI	GCATC	4 cut(s)	77, 301, 492, 796
MaeI	CTAG	2 cut(s)	95, 869
MalI	GATC	7 cut(s)	21, 110, 151, 162, 274, 487, 600
MboI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
MboII	GAAGA	7 cut(s)	56, 146, 148, 193, 309, 424, 524
MflI	RGATCY	3 cut(s)	108, 149, 485
MluCI	AATT	7 cut(s)	29, 357, 463, 528, 670, 770, 848
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	4 cut(s)	32, 409, 720, 846
MmeI	TCCRAC	3 cut(s)	288, 463, 532
MseI	TTAA	3 cut(s)	177, 426, 892
MslI	CAYNNNNRTG	1 cut(s)	858
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	2 cut(s)	758, 863
NarI	GGCGCC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
NlaIII	CATG	4 cut(s)	127, 172, 220, 857
NlaIV	GGNNCC	2 cut(s)	222, 738
NsbI	TGCGCA	1 cut(s)	881
NspI	RCATGY	1 cut(s)	857
PaeI	GCATGC	1 cut(s)	857
PfeI	GAWTC	4 cut(s)	25, 476, 512, 779
PinAI	ACCGGT	1 cut(s)	416
PleI	GAGTC	4 cut(s)	32, 408, 719, 845
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	4 cut(s)	32, 408, 719, 845
Psp6I	CCWGG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	222, 738
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	108, 149, 485
RsaI	GTAC	2 cut(s)	50, 591
RsaNI	GTAC	2 cut(s)	49, 590
RseI	CAYNNNNRTG	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	177, 426, 892
Sau3AI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	4 cut(s)	32, 409, 720, 846
ScrFI	CCNGG	1 cut(s)	609
SetI	ASST	9 cut(s)	205, 234, 296, 336, 559, 728, 763, 834, 868
SfaNI	GCATC	4 cut(s)	77, 301, 492, 796
SfoI	GGCGCC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	858
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	7 cut(s)	29, 357, 463, 528, 670, 770, 848
SsiI	CCGC	2 cut(s)	492, 791
SspDI	GGCGCC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	95, 869
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	168
TaqI	TCGA	2 cut(s)	515, 709
TasI	AATT	7 cut(s)	29, 357, 463, 528, 670, 770, 848
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	25, 476, 512, 779
Tru1I	TTAA	3 cut(s)	177, 426, 892
Tru9I	TTAA	3 cut(s)	177, 426, 892
TscAI	CASTG	3 cut(s)	18, 196, 214
TspDTI	ATGAA	2 cut(s)	149, 558
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	3 cut(s)	18, 196, 214
VpaK11BI	GGWCC	1 cut(s)	737
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	1 cut(s)	770
XbaI	TCTAGA	1 cut(s)	868
XceI	RCATGY	1 cut(s)	857
XspI	CTAG	2 cut(s)	95, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.