Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

79155945 .. 79161376

Gene Structure 5432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGGCCGACTACGAAGGAAGGTACGACGGTAACGGAGAGGACGCTGACGGCTCCTCTCCCCAACCGCGGAGCACTAACCATGGCGGTCTCGACGATTACAGCGATTCCAAATCTCAGCATTCCCGTGATTATGAGAGAGAATCTTCAAAGAGTAGAGAAAAGGGGCGCGATAAGGAGAGGGACAGGGACAGAGATCGGGAGAGAGACAGGGACAGGGACAGGGACAGAGGGAGAAGCAAGGATAAAGATAGAGAGAGGGACAGAGACAGGGGTAGGGATAGGGAACGAGAAAGGGACAGAGACAGGGATCATGATCGTCATCATAGAGACCGCCACAGGGATCGTGAAAGGAGTGAGCGAAGGAGAGATAAGGATGATGATGATGATGAGGATCACTACCGTAGCCGCGACCGGGATAGGCGGAGGGATTATGACAGAGACAGGGAGGATAGGCATAGGCGCAGGTCTCGTTCCATGGGTAGGTCTGAGCATAAATCCAGATCAAGGTCGCGTTCACGCTCACGTTCCAAAAGTCTGTCTTCTGTTCCTGTCATGAATCATAAGGCTCGCGTCCTAAGTTTTCAAATGATTAAGTGGTTAAACTTCAGCAAAAGAATTAGCGGTTTTGACATGGCGCCTCCTGCTTCTGCACTATTACCTGGTGCTGCTGTTCCTGTGACAGCTATATTTTATTCCTTCACTTGTGCACTTAGCTATGATAAAGCTCTGGTCTCTGGAAGGGTTATGATTTCTCTTTTTATTAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGTGTGAGCCGACTTCTGTAGCTTTTATGTACAAGGAGGAATCAATGCACCGGCCAGATTCCTGGAGCTACTCCAACCATTCCTGGGATGTTCCCAAACATCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGCTTAAGCATACACCATCTTCTGGATATGTGCAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTGTTGGAGGGAACACTGCTGGCCCAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACTGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACCGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCAGAGCAAGAGAGTGTTTTGTTGCATGCGCAGCAGCAAATTGCATTGCAGAGGTTCTTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCTTCATTCCACGTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGGACAGGGATGAATGGCAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACAAGTTTGCCCAGGGTGACTATGACGCTAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

628

Amino Acids

71.0

Weight (kDa)

8.03

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	412 - 481	6.6e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1716
Acc16I	TGCGCA	1 cut(s)	1512
Acc36I	ACCTGC	1 cut(s)	453
AccB1I	GGYRCC	3 cut(s)	634, 1088, 1466
AccB7I	CCANNNNNTGG	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	1249
AccII	CGCG	5 cut(s)	67, 168, 408, 511, 570
AccIII	TCCGGA	1 cut(s)	1843
AciI	CCGC	8 cut(s)	65, 67, 84, 331, 406, 421, 621, 1760
AclWI	GGATC	3 cut(s)	315, 348, 399
AcoI	YGGCCR	3 cut(s)	3, 854, 1566
AcsI	RAATTY	2 cut(s)	1670, 1808
AcuI	CTGAAG	2 cut(s)	589, 1634
AcyI	GRCGYC	1 cut(s)	635
AfaI	GTAC	3 cut(s)	23, 833, 1272
AflII	CTTAAG	1 cut(s)	953
AgsI	TTSAA	2 cut(s)	147, 584
AjiI	CACGTC	1 cut(s)	1703
AjnI	CCWGG	6 cut(s)	658, 863, 884, 1198, 1729, 1860
AluBI	AGCT	7 cut(s)	683, 714, 725, 824, 870, 952, 1612
AluI	AGCT	7 cut(s)	683, 714, 725, 824, 870, 952, 1612
Alw21I	GWGCWC	3 cut(s)	74, 709, 916
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	3 cut(s)	315, 348, 399
AlwNI	CAGNNNCTG	2 cut(s)	1205, 1391
Ama87I	CYCGRG	1 cut(s)	1289
Aor13HI	TCCGGA	1 cut(s)	1843
AoxI	GGCC	7 cut(s)	3, 854, 1039, 1047, 1189, 1213, 1566
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	5 cut(s)	665, 1136, 1406, 1513, 1516
ApoI	RAATTY	2 cut(s)	1670, 1808
AspLEI	GCGC	4 cut(s)	168, 462, 637, 1513
AspS9I	GGNCC	4 cut(s)	1040, 1148, 1223, 1301
AsuC2I	CCSGG	2 cut(s)	413, 1786
AsuHPI	GGTGA	3 cut(s)	1435, 1719, 1877
AvaI	CYCGRG	1 cut(s)	1289
AvaII	GGWCC	3 cut(s)	1148, 1223, 1301
BaeGI	GKGCMC	2 cut(s)	709, 1093
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BalI	TGGCCA	1 cut(s)	1568
BanI	GGYRCC	3 cut(s)	634, 1088, 1466
BbsI	GAAGAC	3 cut(s)	531, 1641, 1684
Bbv12I	GWGCWC	3 cut(s)	74, 709, 916
BbvI	GCAGC	5 cut(s)	652, 1123, 1418, 1525, 1528
BccI	CCATC	5 cut(s)	973, 1064, 1135, 1709, 1763
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	6 cut(s)	660, 865, 886, 1200, 1731, 1862
BcnI	CCSGG	2 cut(s)	413, 1786
BfaI	CTAG	4 cut(s)	1113, 1322, 1878, 1885
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	638
BfrI	CTTAAG	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	453
BglII	AGATCT	1 cut(s)	1378
BisI	GCNGC	6 cut(s)	406, 666, 1137, 1407, 1514, 1517
BlsI	GCNGC	6 cut(s)	407, 667, 1138, 1408, 1515, 1518
Bme1390I	CCNGG	8 cut(s)	413, 660, 865, 886, 1200, 1731, 1786, 1862
Bme18I	GGWCC	3 cut(s)	1148, 1223, 1301
BmeT110I	CYCGRG	1 cut(s)	1289
BmgBI	CACGTC	1 cut(s)	1703
BmgT120I	GGNCC	4 cut(s)	1040, 1148, 1223, 1301
BmiI	GGNNCC	7 cut(s)	52, 636, 1090, 1224, 1303, 1468, 1774
BmrFI	CCNGG	8 cut(s)	413, 660, 865, 886, 1200, 1731, 1786, 1862
BmrI	ACTGGG	1 cut(s)	1155
BmuI	ACTGGG	1 cut(s)	1155
BpiI	GAAGAC	3 cut(s)	531, 1641, 1684
BpmI	CTGGAG	2 cut(s)	886, 1752
BpuEI	CTTGAG	2 cut(s)	1238, 1646
BpuMI	CCSGG	2 cut(s)	413, 1786
BsaBI	GATNNNNATC	3 cut(s)	312, 318, 390
BsaHI	GRCGYC	1 cut(s)	635
BsaI	GGTCTC	5 cut(s)	92, 321, 471, 736, 1102
BsaJI	CCNNGG	7 cut(s)	65, 79, 474, 885, 1309, 1860, 1861
BsaWI	WCCGGW	1 cut(s)	1843
BsaXI	ACNNNNNCTCC	4 cut(s)	1099, 1129, 1838, 1868
Bse118I	RCCGGY	1 cut(s)	852
Bse1I	ACTGG	3 cut(s)	920, 1161, 1823
Bse3DI	GCAATG	5 cut(s)	774, 945, 1060, 1065, 1526
Bse8I	GATNNNNATC	3 cut(s)	312, 318, 390
BseAI	TCCGGA	1 cut(s)	1843
BseBI	CCWGG	6 cut(s)	660, 865, 886, 1200, 1731, 1862
BseDI	CCNNGG	7 cut(s)	65, 79, 474, 885, 1309, 1860, 1861
BseGI	GGATG	7 cut(s)	379, 895, 1075, 1612, 1624, 1768, 1800
BseJI	GATNNNNATC	3 cut(s)	312, 318, 390
BseMI	GCAATG	5 cut(s)	774, 945, 1060, 1065, 1526
BseMII	CTCAG	2 cut(s)	128, 477
BseNI	ACTGG	3 cut(s)	920, 1161, 1823
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	2 cut(s)	709, 1093
BseXI	GCAGC	5 cut(s)	652, 1123, 1418, 1525, 1528
BsgI	GTGCAG	4 cut(s)	633, 953, 1001, 1425
Bsh1236I	CGCG	5 cut(s)	67, 168, 408, 511, 570
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	7 cut(s)	5, 856, 1041, 1049, 1191, 1215, 1568
BshNI	GGYRCC	3 cut(s)	634, 1088, 1466
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	3 cut(s)	74, 709, 916
BsiHKCI	CYCGRG	1 cut(s)	1289
BsiSI	CCGG	4 cut(s)	412, 853, 1786, 1844
BslFI	GGGAC	8 cut(s)	194, 200, 224, 230, 236, 272, 308, 1236
BsmFI	GGGAC	8 cut(s)	194, 200, 224, 230, 236, 272, 308, 1236
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	7 cut(s)	5, 856, 1041, 1049, 1191, 1215, 1568
Bso31I	GGTCTC	5 cut(s)	92, 321, 471, 736, 1102
BsoBI	CYCGRG	1 cut(s)	1289
Bsp1286I	GDGCHC	4 cut(s)	74, 709, 916, 1093
Bsp13I	TCCGGA	1 cut(s)	1843
Bsp1407I	TGTACA	1 cut(s)	831
Bsp19I	CCATGG	2 cut(s)	79, 474
BspACI	CCGC	8 cut(s)	65, 67, 84, 331, 406, 421, 621, 1760
BspANI	GGCC	7 cut(s)	5, 856, 1041, 1049, 1191, 1215, 1568
BspCNI	CTCAG	2 cut(s)	127, 478
BspEI	TCCGGA	1 cut(s)	1843
BspFNI	CGCG	5 cut(s)	67, 168, 408, 511, 570
BspHI	TCATGA	2 cut(s)	310, 552
BspLI	GGNNCC	7 cut(s)	52, 636, 1090, 1224, 1303, 1468, 1774
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	3 cut(s)	315, 348, 399
BspT107I	GGYRCC	3 cut(s)	634, 1088, 1466
BspTI	CTTAAG	1 cut(s)	953
BspTNI	GGTCTC	5 cut(s)	92, 321, 471, 736, 1102
BsrDI	GCAATG	5 cut(s)	774, 945, 1060, 1065, 1526
BsrFI	RCCGGY	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	920, 1161, 1823
BssAI	RCCGGY	1 cut(s)	852
BssECI	CCNNGG	7 cut(s)	65, 79, 474, 885, 1309, 1860, 1861
BssNI	GRCGYC	1 cut(s)	635
BssT1I	CCWWGG	2 cut(s)	79, 474
Bst2UI	CCWGG	6 cut(s)	660, 865, 886, 1200, 1731, 1862
Bst4CI	ACNGT	4 cut(s)	29, 401, 791, 1447
BstACI	GRCGYC	1 cut(s)	635
BstAFI	CTTAAG	1 cut(s)	953
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	9 cut(s)	568, 936, 1017, 1039, 1051, 1157, 1455, 1509, 1557
BstDEI	CTNAG	4 cut(s)	114, 486, 575, 710
BstDSI	CCRYGG	4 cut(s)	65, 79, 474, 1309
BstF5I	GGATG	7 cut(s)	379, 895, 1075, 1612, 1624, 1768, 1800
BstFNI	CGCG	5 cut(s)	67, 168, 408, 511, 570
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	4 cut(s)	168, 462, 637, 1513
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	5 cut(s)	641, 1055, 1406, 1513, 1565
BstNI	CCWGG	6 cut(s)	660, 865, 886, 1200, 1731, 1862
BstNSI	RCATGY	2 cut(s)	1019, 1511
BstSCI	CCNGG	8 cut(s)	411, 658, 863, 884, 1198, 1729, 1784, 1860
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	2 cut(s)	709, 1093
BstUI	CGCG	5 cut(s)	67, 168, 408, 511, 570
BstV1I	GCAGC	5 cut(s)	652, 1123, 1418, 1525, 1528
BstV2I	GAAGAC	3 cut(s)	531, 1641, 1684
BstX2I	RGATCY	1 cut(s)	1378
BstXI	CCANNNNNNTGG	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	1378
BsuRI	GGCC	7 cut(s)	5, 856, 1041, 1049, 1191, 1215, 1568
BtgI	CCRYGG	4 cut(s)	65, 79, 474, 1309
BtrI	CACGTC	1 cut(s)	1703
BtsCI	GGATG	7 cut(s)	379, 895, 1075, 1612, 1624, 1768, 1800
BtsI	GCAGTG	2 cut(s)	1032, 1839
BtsIMutI	CAGTG	4 cut(s)	787, 1032, 1409, 1839
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	9 cut(s)	568, 936, 1017, 1039, 1051, 1157, 1455, 1509, 1557
CaiI	CAGNNNCTG	2 cut(s)	1205, 1391
CciI	TCATGA	2 cut(s)	310, 552
CfoI	GCGC	4 cut(s)	168, 462, 637, 1513
Cfr10I	RCCGGY	1 cut(s)	852
Cfr13I	GGNCC	4 cut(s)	1040, 1148, 1223, 1301
Cfr42I	CCGCGG	1 cut(s)	68
CseI	GACGC	3 cut(s)	50, 559, 1678
CsiI	ACCWGGT	2 cut(s)	658, 1198
Csp6I	GTAC	3 cut(s)	22, 832, 1271
CspCI	CAANNNNNGTGG	2 cut(s)	1558, 1593
CviAII	CATG	8 cut(s)	80, 311, 475, 553, 631, 1007, 1016, 1508
CviQI	GTAC	3 cut(s)	22, 832, 1271
DdeI	CTNAG	4 cut(s)	114, 486, 575, 710
DinI	GGCGCC	1 cut(s)	636
DrdI	GACNNNNNNGTC	1 cut(s)	1716
DseDI	GACNNNNNNGTC	1 cut(s)	1716
EaeI	YGGCCR	3 cut(s)	3, 854, 1566
EciI	GGCGGA	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	79, 474
Eco31I	GGTCTC	5 cut(s)	92, 321, 471, 736, 1102
Eco47I	GGWCC	3 cut(s)	1148, 1223, 1301
Eco57I	CTGAAG	2 cut(s)	589, 1634
Eco88I	CYCGRG	1 cut(s)	1289
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoRII	CCWGG	6 cut(s)	658, 863, 884, 1198, 1729, 1860
EcoT14I	CCWWGG	2 cut(s)	79, 474
EcoT22I	ATGCAT	1 cut(s)	1017
EgeI	GGCGCC	1 cut(s)	636
EheI	GGCGCC	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	79, 474
FaeI	CATG	8 cut(s)	83, 314, 478, 556, 634, 1010, 1019, 1511
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FaqI	GGGAC	8 cut(s)	194, 200, 224, 230, 236, 272, 308, 1236
FatI	CATG	8 cut(s)	79, 310, 474, 552, 630, 1006, 1015, 1507
FblI	GTMKAC	1 cut(s)	1249
Fnu4HI	GCNGC	6 cut(s)	406, 666, 1137, 1407, 1514, 1517
FokI	GGATG	7 cut(s)	386, 902, 1082, 1619, 1631, 1775, 1807
Fsp4HI	GCNGC	6 cut(s)	406, 666, 1137, 1407, 1514, 1517
FspBI	CTAG	4 cut(s)	1113, 1322, 1878, 1885
FspI	TGCGCA	1 cut(s)	1512
GlaI	GCGC	4 cut(s)	167, 461, 636, 1512
GluI	GCNGC	6 cut(s)	406, 666, 1137, 1407, 1514, 1517
GsuI	CTGGAG	2 cut(s)	886, 1752
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	7 cut(s)	5, 856, 1041, 1049, 1191, 1215, 1568
HapII	CCGG	4 cut(s)	412, 853, 1786, 1844
HgaI	GACGC	3 cut(s)	50, 559, 1678
HhaI	GCGC	4 cut(s)	168, 462, 637, 1513
Hin1I	GRCGYC	1 cut(s)	635
Hin1II	CATG	8 cut(s)	83, 314, 478, 556, 634, 1010, 1019, 1511
Hin6I	GCGC	4 cut(s)	166, 460, 635, 1511
HinP1I	GCGC	4 cut(s)	166, 460, 635, 1511
HincII	GTYRAC	1 cut(s)	1721
HindII	GTYRAC	1 cut(s)	1721
HinfI	GANTC	8 cut(s)	104, 140, 556, 842, 860, 943, 1292, 1819
HpaII	CCGG	4 cut(s)	412, 853, 1786, 1844
HphI	GGTGA	3 cut(s)	1435, 1719, 1877
Hpy166II	GTNNAC	7 cut(s)	515, 707, 1250, 1372, 1679, 1706, 1721
Hpy188I	TCNGA	2 cut(s)	487, 1173
Hpy8I	GTNNAC	7 cut(s)	515, 707, 1250, 1372, 1679, 1706, 1721
Hpy99I	CGWCG	2 cut(s)	29, 95
HpyAV	CCTTC	6 cut(s)	8, 12, 354, 706, 732, 1609
HpyCH4III	ACNGT	4 cut(s)	29, 401, 791, 1447
HpyCH4IV	ACGT	2 cut(s)	523, 1702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	641, 1055, 1406, 1513, 1565
HpyF3I	CTNAG	4 cut(s)	114, 486, 575, 710
HpySE526I	ACGT	2 cut(s)	523, 1702
Hsp92I	GRCGYC	1 cut(s)	635
Hsp92II	CATG	8 cut(s)	83, 314, 478, 556, 634, 1010, 1019, 1511
HspAI	GCGC	4 cut(s)	166, 460, 635, 1511
KasI	GGCGCC	1 cut(s)	634
Kpn2I	TCCGGA	1 cut(s)	1843
KspI	CCGCGG	1 cut(s)	68
LmnI	GCTCC	4 cut(s)	56, 69, 867, 911
Lsp1109I	GCAGC	5 cut(s)	652, 1123, 1418, 1525, 1528
MabI	ACCWGGT	2 cut(s)	658, 1198
MaeI	CTAG	4 cut(s)	1113, 1322, 1878, 1885
MaeII	ACGT	2 cut(s)	523, 1702
MaeIII	GTNAC	6 cut(s)	29, 676, 1115, 1387, 1597, 1865
MboII	GAAGA	6 cut(s)	135, 531, 960, 1646, 1658, 1684
MflI	RGATCY	1 cut(s)	1378
MhlI	GDGCHC	4 cut(s)	74, 709, 916, 1093
MlsI	TGGCCA	1 cut(s)	1568
MluCI	AATT	4 cut(s)	615, 1521, 1670, 1808
MluNI	TGGCCA	1 cut(s)	1568
Mly113I	GGCGCC	1 cut(s)	635
MlyI	GAGTC	2 cut(s)	937, 1301
MmeI	TCCRAC	3 cut(s)	900, 1003, 1717
Mox20I	TGGCCA	1 cut(s)	1568
Mph1103I	ATGCAT	1 cut(s)	1017
MroI	TCCGGA	1 cut(s)	1843
MscI	TGGCCA	1 cut(s)	1568
MseI	TTAA	7 cut(s)	591, 599, 762, 954, 1098, 1422, 1586
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	1568
MspA1I	CMGCKG	1 cut(s)	67
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	4 cut(s)	412, 853, 1786, 1844
MspR9I	CCNGG	8 cut(s)	413, 660, 865, 886, 1200, 1731, 1786, 1862
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	6 cut(s)	660, 865, 886, 1200, 1731, 1862
MvnI	CGCG	5 cut(s)	67, 168, 408, 511, 570
MwoI	GCNNNNNNNGC	5 cut(s)	641, 1055, 1406, 1513, 1565
NarI	GGCGCC	1 cut(s)	635
NciI	CCSGG	2 cut(s)	413, 1786
NcoI	CCATGG	2 cut(s)	79, 474
NlaIII	CATG	8 cut(s)	83, 314, 478, 556, 634, 1010, 1019, 1511
NlaIV	GGNNCC	7 cut(s)	52, 636, 1090, 1224, 1303, 1468, 1774
NmuCI	GTSAC	3 cut(s)	676, 1115, 1865
NsbI	TGCGCA	1 cut(s)	1512
NsiI	ATGCAT	1 cut(s)	1017
NspI	RCATGY	2 cut(s)	1019, 1511
PaeI	GCATGC	2 cut(s)	1019, 1511
PaeR7I	CTCGAG	1 cut(s)	1289
PagI	TCATGA	2 cut(s)	310, 552
PasI	CCCWGGG	1 cut(s)	1861
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	6 cut(s)	104, 140, 556, 842, 860, 1819
PflMI	CCANNNNNTGG	1 cut(s)	971
PfoI	TCCNGGA	1 cut(s)	863
PkrI	GCNGC	6 cut(s)	407, 667, 1138, 1408, 1515, 1518
PleI	GAGTC	2 cut(s)	937, 1300
PluTI	GGCGCC	1 cut(s)	638
PpsI	GAGTC	2 cut(s)	937, 1300
PpuMI	RGGWCCY	1 cut(s)	1223
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	6 cut(s)	658, 863, 884, 1198, 1729, 1860
PspGI	CCWGG	6 cut(s)	658, 863, 884, 1198, 1729, 1860
PspN4I	GGNNCC	7 cut(s)	52, 636, 1090, 1224, 1303, 1468, 1774
PspPI	GGNCC	4 cut(s)	1040, 1148, 1223, 1301
PspPPI	RGGWCCY	1 cut(s)	1223
PspXI	VCTCGAGB	1 cut(s)	1289
PstNI	CAGNNNCTG	2 cut(s)	1205, 1391
PsuI	RGATCY	1 cut(s)	1378
RsaI	GTAC	3 cut(s)	23, 833, 1272
RsaNI	GTAC	3 cut(s)	22, 832, 1271
RseI	CAYNNNNRTG	1 cut(s)	123
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	7 cut(s)	591, 599, 762, 954, 1098, 1422, 1586
SatI	GCNGC	6 cut(s)	406, 666, 1137, 1407, 1514, 1517
Sau96I	GGNCC	4 cut(s)	1040, 1148, 1223, 1301
SchI	GAGTC	2 cut(s)	937, 1301
ScrFI	CCNGG	8 cut(s)	413, 660, 865, 886, 1200, 1731, 1786, 1862
SduI	GDGCHC	4 cut(s)	74, 709, 916, 1093
SexAI	ACCWGGT	2 cut(s)	658, 1198
SfcI	CTRYAG	1 cut(s)	819
SfoI	GGCGCC	1 cut(s)	636
Sfr274I	CTCGAG	1 cut(s)	1289
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	3 cut(s)	1148, 1223, 1301
SlaI	CTCGAG	1 cut(s)	1289
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	4 cut(s)	953, 1217, 1289, 1625
SmoI	CTYRAG	4 cut(s)	953, 1217, 1289, 1625
SphI	GCATGC	2 cut(s)	1019, 1511
Sse9I	AATT	4 cut(s)	615, 1521, 1670, 1808
SsiI	CCGC	8 cut(s)	65, 67, 84, 331, 406, 421, 621, 1760
SspDI	GGCGCC	1 cut(s)	634
SspMI	CTAG	4 cut(s)	1113, 1322, 1878, 1885
StyD4I	CCNGG	8 cut(s)	411, 658, 863, 884, 1198, 1729, 1784, 1860
StyI	CCWWGG	2 cut(s)	79, 474
TaaI	ACNGT	4 cut(s)	29, 401, 791, 1447
TaiI	ACGT	2 cut(s)	526, 1705
TaqI	TCGA	3 cut(s)	90, 1290, 1349
TasI	AATT	4 cut(s)	615, 1521, 1670, 1808
TatI	WGTACW	2 cut(s)	831, 1270
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	6 cut(s)	104, 140, 556, 842, 860, 1819
Tru1I	TTAA	7 cut(s)	591, 599, 762, 954, 1098, 1422, 1586
Tru9I	TTAA	7 cut(s)	591, 599, 762, 954, 1098, 1422, 1586
TscAI	CASTG	4 cut(s)	794, 1039, 1416, 1839
TseFI	GTSAC	3 cut(s)	676, 1115, 1865
TseI	GCWGC	5 cut(s)	665, 1136, 1406, 1513, 1516
Tsp45I	GTSAC	3 cut(s)	676, 1115, 1865
TspDTI	ATGAA	5 cut(s)	569, 1647, 1667, 1684, 1811
TspGWI	ACGGA	2 cut(s)	48, 1298
TspRI	CASTG	4 cut(s)	794, 1039, 1416, 1839
Van91I	CCANNNNNTGG	1 cut(s)	971
Vha464I	CTTAAG	1 cut(s)	953
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	3 cut(s)	1148, 1223, 1301
XapI	RAATTY	2 cut(s)	1670, 1808
XceI	RCATGY	2 cut(s)	1019, 1511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1057
XhoI	CTCGAG	1 cut(s)	1289
XmiI	GTMKAC	1 cut(s)	1249
XspI	CTAG	4 cut(s)	1113, 1322, 1878, 1885
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.