Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001167.1

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

125472 .. 129354

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001167.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgaatacgccctatcgtggtggcggcggtgggagtaggaatgatgagggcgagttatttgcggtggaacttgccaacgaaaatggttccccatggtgtgtcctgagcagatcctttctgaaattttgcattcttggttgggataatcttccccaaacatttaaggacatttcattcaatgcagtagcaagctcaagatctcaagccatggctactaggcatgcccggagggtgtatgttggagggcttccccctacagcaaatgaacagtcggttgctacatttttcagccatgtaatgcatgctattggagggaacactgctggcccaggagatgctgttgttaatgtttacatcaaccatgaaaaaaaatttgcctttgtggagatgagatctgtggaagaggccagcaatgcaatggctttggatgggattattttcgagggtgcccctgttaaggttaggagacctagtgactacaacccatctcttgctgcaacacttggtccaagccagcccagtccaaatctgaacttggctaatgtcggcctgacaccaggttctgctggtggccttgagggacctgatcgcatttttgttggtggtctaccctattactttacagaagtacagatcaaggagttgctcgagtcttttggacccctccgtggttttgatctagtgaaagatagggaaacaggaaattcgaaaggatatgccttttgtgtttaccaagatctttcagttaccgacatagcctgtgcagcactgaatgggattaaaatgggagacaagaccctcacggtcaggcgtgctaatcaaggtgccaaccagccaaaacctgagcaagagagtgttttgttgcatgcacagcagcaaattgcattgcaggtttttttccgtcgcaaatactttttgcgacggcattttaccgtcgcaaatactttttgcgacggcattttaccgtcgcaaatggattttgtgacgccacctattgcaacgccaatatttccgtcgcaaaatgctcatttttccgtcgcaaaagcccaaattgccgtcgcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

355

Amino Acids

38.51

Weight (kDa)

8.22

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	880
AccB1I	GGYRCC	2 cut(s)	446, 824
AccI	GTMKAC	1 cut(s)	607
AciI	CCGC	3 cut(s)	24, 27, 62
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	122, 371, 703
AcyI	GRCGYC	1 cut(s)	986
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	3 cut(s)	17, 457, 668
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	328, 556
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	460, 783
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	4 cut(s)	325, 405, 547, 571
ApeKI	GCWGC	3 cut(s)	494, 764, 874
ApoI	RAATTY	3 cut(s)	122, 371, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	4 cut(s)	326, 506, 581, 659
AsuC2I	CCSGG	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	3 cut(s)	506, 581, 659
BaeGI	GKGCMC	1 cut(s)	451
BanI	GGYRCC	2 cut(s)	446, 824
BbvI	GCAGC	3 cut(s)	481, 776, 886
BccI	CCATC	2 cut(s)	422, 493
BceAI	ACGGC	3 cut(s)	938, 970, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	2 cut(s)	330, 558
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	460, 783
BfaI	CTAG	3 cut(s)	216, 471, 680
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	880
BglII	AGATCT	3 cut(s)	197, 392, 736
BisI	GCNGC	4 cut(s)	25, 495, 765, 875
BlsI	GCNGC	4 cut(s)	26, 496, 766, 876
Bme1390I	CCNGG	3 cut(s)	226, 330, 558
Bme18I	GGWCC	3 cut(s)	506, 581, 659
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	4 cut(s)	326, 506, 581, 659
BmiI	GGNNCC	5 cut(s)	88, 448, 582, 661, 826
BmrFI	CCNGG	3 cut(s)	226, 330, 558
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	513
Bpu10I	CCTNAGC	2 cut(s)	104, 843
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	3 cut(s)	178, 186, 596
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	986
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	4 cut(s)	92, 207, 328, 667
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 457, 668
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	3 cut(s)	418, 423, 884
BseBI	CCWGG	2 cut(s)	330, 558
BseDI	CCNNGG	4 cut(s)	92, 207, 328, 667
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	3 cut(s)	17, 457, 668
BseMI	GCAATG	3 cut(s)	418, 423, 884
BseMII	CTCAG	2 cut(s)	95, 834
BseNI	ACTGG	1 cut(s)	519
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	3 cut(s)	481, 776, 886
BsgI	GTGCAG	1 cut(s)	783
BshFI	GGCC	4 cut(s)	327, 407, 549, 573
BshNI	GGYRCC	2 cut(s)	446, 824
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	3 cut(s)	17, 457, 668
BsmAI	GTCTC	2 cut(s)	460, 783
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	4 cut(s)	327, 407, 549, 573
Bso31I	GGTCTC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
Bsp19I	CCATGG	2 cut(s)	92, 207
BspACI	CCGC	3 cut(s)	24, 27, 62
BspANI	GGCC	4 cut(s)	327, 407, 549, 573
BspCNI	CTCAG	2 cut(s)	96, 835
BspLI	GGNNCC	5 cut(s)	88, 448, 582, 661, 826
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	2 cut(s)	446, 824
BspTNI	GGTCTC	1 cut(s)	460
BsrDI	GCAATG	3 cut(s)	418, 423, 884
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	4 cut(s)	92, 207, 328, 667
BssMI	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
BssNI	GRCGYC	1 cut(s)	986
BssT1I	CCWWGG	2 cut(s)	92, 207
Bst2UI	CCWGG	2 cut(s)	330, 558
Bst4CI	ACNGT	4 cut(s)	270, 805, 934, 966
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	8 cut(s)	190, 222, 303, 325, 409, 515, 813, 867
BstDEI	CTNAG	2 cut(s)	104, 843
BstDSI	CCRYGG	3 cut(s)	92, 207, 667
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	7 cut(s)	113, 200, 395, 589, 636, 679, 739
BstMAI	GTCTC	2 cut(s)	460, 783
BstMBI	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 764, 871, 1052
BstNI	CCWGG	2 cut(s)	330, 558
BstNSI	RCATGY	3 cut(s)	224, 305, 869
BstSCI	CCNGG	3 cut(s)	224, 328, 556
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	3 cut(s)	481, 776, 886
BstX2I	RGATCY	4 cut(s)	110, 197, 392, 736
BstYI	RGATCY	4 cut(s)	110, 197, 392, 736
BsuRI	GGCC	4 cut(s)	327, 407, 549, 573
BtgI	CCRYGG	3 cut(s)	92, 207, 667
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	318, 767
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	8 cut(s)	190, 222, 303, 325, 409, 515, 813, 867
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	326, 506, 581, 659
CseI	GACGC	1 cut(s)	994
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	7 cut(s)	93, 208, 221, 293, 302, 362, 866
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	2 cut(s)	104, 843
DpnI	GATC	7 cut(s)	112, 199, 394, 588, 635, 678, 738
DpnII	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	92, 207
Eco31I	GGTCTC	1 cut(s)	460
Eco47I	GGWCC	3 cut(s)	506, 581, 659
Eco88I	CYCGRG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	328, 556
EcoT14I	CCWWGG	2 cut(s)	92, 207
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	92, 207
FaeI	CATG	7 cut(s)	96, 211, 224, 296, 305, 365, 869
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	7 cut(s)	92, 207, 220, 292, 301, 361, 865
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	25, 495, 765, 875
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	25, 495, 765, 875
FspBI	CTAG	3 cut(s)	216, 471, 680
GluI	GCNGC	4 cut(s)	25, 495, 765, 875
HaeIII	GGCC	4 cut(s)	327, 407, 549, 573
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	994
Hin1I	GRCGYC	1 cut(s)	986
Hin1II	CATG	7 cut(s)	96, 211, 224, 296, 305, 365, 869
HinfI	GANTC	1 cut(s)	650
HpaII	CCGG	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	352, 608, 730
Hpy188I	TCNGA	2 cut(s)	120, 531
Hpy188III	TCNNGA	2 cut(s)	103, 195
Hpy8I	GTNNAC	3 cut(s)	352, 608, 730
Hpy99I	CGWCG	8 cut(s)	906, 924, 938, 956, 970, 1018, 1040, 1061
HpyCH4III	ACNGT	4 cut(s)	270, 805, 934, 966
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 764, 871, 1052
HpyF3I	CTNAG	2 cut(s)	104, 843
Hsp92I	GRCGYC	1 cut(s)	986
Hsp92II	CATG	7 cut(s)	96, 211, 224, 296, 305, 365, 869
Kzo9I	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
Lsp1109I	GCAGC	3 cut(s)	481, 776, 886
LweI	GCATC	1 cut(s)	325
MabI	ACCWGGT	1 cut(s)	556
MaeI	CTAG	3 cut(s)	216, 471, 680
MaeIII	GTNAC	3 cut(s)	473, 745, 982
MalI	GATC	7 cut(s)	112, 199, 394, 588, 635, 678, 738
MboI	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
MboII	GAAGA	2 cut(s)	140, 413
MflI	RGATCY	4 cut(s)	110, 197, 392, 736
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	5 cut(s)	122, 371, 703, 879, 1050
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	40, 222, 236, 305, 397, 436, 571, 674, 809
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	4 cut(s)	162, 345, 456, 780
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	3 cut(s)	226, 330, 558
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	330, 558
MwoI	GCNNNNNNNGC	4 cut(s)	413, 764, 871, 1052
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	2 cut(s)	92, 207
NdeII	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
NlaIII	CATG	7 cut(s)	96, 211, 224, 296, 305, 365, 869
NlaIV	GGNNCC	5 cut(s)	88, 448, 582, 661, 826
NmuCI	GTSAC	2 cut(s)	473, 982
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	3 cut(s)	224, 305, 869
NspV	TTCGAA	1 cut(s)	707
PaeI	GCATGC	3 cut(s)	224, 305, 869
PaeR7I	CTCGAG	1 cut(s)	647
PctI	GAATGC	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	26, 496, 766, 876
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	328, 556
PspGI	CCWGG	2 cut(s)	328, 556
PspN4I	GGNNCC	5 cut(s)	88, 448, 582, 661, 826
PspPI	GGNCC	4 cut(s)	326, 506, 581, 659
PspPPI	RGGWCCY	1 cut(s)	581
PspXI	VCTCGAGB	1 cut(s)	647
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	4 cut(s)	110, 197, 392, 736
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	162, 345, 456, 780
SatI	GCNGC	4 cut(s)	25, 495, 765, 875
Sau3AI	GATC	7 cut(s)	110, 197, 392, 586, 633, 676, 736
Sau96I	GGNCC	4 cut(s)	326, 506, 581, 659
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	3 cut(s)	226, 330, 558
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	9 cut(s)	194, 462, 472, 562, 586, 826, 844, 894, 994
SexAI	ACCWGGT	1 cut(s)	556
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	647
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	3 cut(s)	506, 581, 659
SlaI	CTCGAG	1 cut(s)	647
SmlI	CTYRAG	4 cut(s)	193, 201, 575, 647
SmoI	CTYRAG	4 cut(s)	193, 201, 575, 647
SphI	GCATGC	3 cut(s)	224, 305, 869
Sse9I	AATT	5 cut(s)	122, 371, 703, 879, 1050
SsiI	CCGC	3 cut(s)	24, 27, 62
SspI	AATATT	1 cut(s)	1008
SspMI	CTAG	3 cut(s)	216, 471, 680
StyD4I	CCNGG	3 cut(s)	224, 328, 556
StyI	CCWWGG	2 cut(s)	92, 207
TaaI	ACNGT	4 cut(s)	270, 805, 934, 966
TaqI	TCGA	3 cut(s)	441, 648, 707
TasI	AATT	5 cut(s)	122, 371, 703, 879, 1050
TatI	WGTACW	1 cut(s)	628
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	4 cut(s)	162, 345, 456, 780
Tru9I	TTAA	4 cut(s)	162, 345, 456, 780
TscAI	CASTG	2 cut(s)	325, 774
TseFI	GTSAC	2 cut(s)	473, 982
TseI	GCWGC	3 cut(s)	494, 764, 874
Tsp45I	GTSAC	2 cut(s)	473, 982
TspDTI	ATGAA	4 cut(s)	17, 162, 279, 378
TspGWI	ACGGA	4 cut(s)	656, 890, 1002, 1024
TspRI	CASTG	2 cut(s)	325, 774
VpaK11BI	GGWCC	3 cut(s)	506, 581, 659
XapI	RAATTY	3 cut(s)	122, 371, 703
XceI	RCATGY	3 cut(s)	224, 305, 869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	3 cut(s)	216, 471, 680
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.