Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

13172311 .. 13177740

Gene Structure 5430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTCAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACTGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTTGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGCCTTTTTTGTAGTCCCACAATGTGCTATAAAGAATCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

315

Amino Acids

34.18

Weight (kDa)

5.23

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	155 - 224	2.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AccB1I	GGYRCC	2 cut(s)	317, 695
AccI	GTMKAC	1 cut(s)	478
AcoI	YGGCCR	2 cut(s)	31, 795
AcsI	RAATTY	2 cut(s)	242, 899
AcuI	CTGAAG	1 cut(s)	863
AdeI	CACNNNGTG	1 cut(s)	926
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	328, 539
AflIII	ACRYGT	1 cut(s)	12
AjnI	CCWGG	2 cut(s)	199, 427
AluBI	AGCT	1 cut(s)	841
AluI	AGCT	1 cut(s)	841
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	331, 654
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	7 cut(s)	31, 196, 276, 418, 442, 795, 942
ApeKI	GCWGC	3 cut(s)	365, 635, 745
ApoI	RAATTY	2 cut(s)	242, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspS9I	GGNCC	4 cut(s)	197, 377, 452, 530
AsuC2I	CCSGG	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	3 cut(s)	377, 452, 530
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	2 cut(s)	33, 797
BanI	GGYRCC	2 cut(s)	317, 695
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	352, 647, 757
BccI	CCATC	2 cut(s)	293, 364
BcgI	CGANNNNNNTGC	2 cut(s)	884, 918
BciT130I	CCWGG	2 cut(s)	201, 429
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	331, 654
BfaI	CTAG	3 cut(s)	87, 342, 551
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	2 cut(s)	263, 607
BisI	GCNGC	3 cut(s)	366, 636, 746
BlsI	GCNGC	3 cut(s)	367, 637, 747
Bme1390I	CCNGG	3 cut(s)	97, 201, 429
Bme18I	GGWCC	3 cut(s)	377, 452, 530
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	4 cut(s)	197, 377, 452, 530
BmiI	GGNNCC	5 cut(s)	319, 453, 532, 697, 767
BmrFI	CCNGG	3 cut(s)	97, 201, 429
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	870
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	467, 875
BpuMI	CCSGG	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	3 cut(s)	199, 428, 538
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 539
Bse1I	ACTGG	4 cut(s)	34, 34, 50, 390
Bse3DI	GCAATG	4 cut(s)	75, 289, 294, 755
BseBI	CCWGG	2 cut(s)	201, 429
BseDI	CCNNGG	3 cut(s)	199, 428, 538
BseGI	GGATG	3 cut(s)	304, 841, 853
BseLI	CCNNNNNNNGG	2 cut(s)	328, 539
BseMI	GCAATG	4 cut(s)	75, 289, 294, 755
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	4 cut(s)	34, 34, 50, 390
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	352, 647, 757
BsgI	GTGCAG	2 cut(s)	83, 654
BshFI	GGCC	7 cut(s)	33, 198, 278, 420, 444, 797, 944
BshNI	GGYRCC	2 cut(s)	317, 695
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	465, 902
BslI	CCNNNNNNNGG	2 cut(s)	328, 539
BsmAI	GTCTC	2 cut(s)	331, 654
BsmFI	GGGAC	2 cut(s)	465, 902
BsnI	GGCC	7 cut(s)	33, 198, 278, 420, 444, 797, 944
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	46, 322
Bsp143I	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
BspANI	GGCC	7 cut(s)	33, 198, 278, 420, 444, 797, 944
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	5 cut(s)	319, 453, 532, 697, 767
BspT107I	GGYRCC	2 cut(s)	317, 695
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	4 cut(s)	75, 289, 294, 755
BsrI	ACTGG	4 cut(s)	34, 34, 50, 390
BssECI	CCNNGG	3 cut(s)	199, 428, 538
BssMI	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
Bst2UI	CCWGG	2 cut(s)	201, 429
Bst4CI	ACNGT	2 cut(s)	141, 676
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	9 cut(s)	66, 93, 174, 196, 280, 386, 684, 738, 786
BstDEI	CTNAG	1 cut(s)	714
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	3 cut(s)	304, 841, 853
BstKTI	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
BstMAI	GTCTC	2 cut(s)	331, 654
BstMBI	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 635, 742, 794
BstNI	CCWGG	2 cut(s)	201, 429
BstNSI	RCATGY	4 cut(s)	16, 95, 176, 740
BstSCI	CCNGG	3 cut(s)	95, 199, 427
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	352, 647, 757
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	2 cut(s)	263, 607
BstYI	RGATCY	2 cut(s)	263, 607
BsuRI	GGCC	7 cut(s)	33, 198, 278, 420, 444, 797, 944
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	3 cut(s)	304, 841, 853
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 638, 672
Cac8I	GCNNGC	9 cut(s)	66, 93, 174, 196, 280, 386, 684, 738, 786
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	4 cut(s)	197, 377, 452, 530
Csp6I	GTAC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	6 cut(s)	13, 92, 164, 173, 233, 737
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	6 cut(s)	265, 459, 506, 549, 609, 852
DpnII	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
DraIII	CACNNNGTG	1 cut(s)	926
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	31, 795
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	944
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	3 cut(s)	377, 452, 530
Eco57I	CTGAAG	1 cut(s)	863
Eco88I	CYCGRG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	199, 427
EcoT22I	ATGCAT	1 cut(s)	174
FaeI	CATG	6 cut(s)	16, 95, 167, 176, 236, 740
FaqI	GGGAC	2 cut(s)	465, 902
FatI	CATG	6 cut(s)	12, 91, 163, 172, 232, 736
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	366, 636, 746
FokI	GGATG	3 cut(s)	311, 848, 860
Fsp4HI	GCNGC	3 cut(s)	366, 636, 746
FspBI	CTAG	3 cut(s)	87, 342, 551
GluI	GCNGC	3 cut(s)	366, 636, 746
HaeIII	GGCC	7 cut(s)	33, 198, 278, 420, 444, 797, 944
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	6 cut(s)	16, 95, 167, 176, 236, 740
HinfI	GANTC	3 cut(s)	73, 521, 937
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	3 cut(s)	223, 479, 601
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	1 cut(s)	854
Hpy8I	GTNNAC	3 cut(s)	223, 479, 601
HpyAV	CCTTC	1 cut(s)	838
HpyCH4III	ACNGT	2 cut(s)	141, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 635, 742, 794
HpyF3I	CTNAG	1 cut(s)	714
Hsp92II	CATG	6 cut(s)	16, 95, 167, 176, 236, 740
Kzo9I	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	3 cut(s)	352, 647, 757
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	87, 342, 551
MaeIII	GTNAC	3 cut(s)	344, 616, 826
MalI	GATC	6 cut(s)	265, 459, 506, 549, 609, 852
MboI	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
MboII	GAAGA	3 cut(s)	284, 875, 887
MflI	RGATCY	2 cut(s)	263, 607
MhlI	GDGCHC	2 cut(s)	46, 322
MlsI	TGGCCA	2 cut(s)	33, 797
MluCI	AATT	3 cut(s)	242, 750, 899
MluNI	TGGCCA	2 cut(s)	33, 797
MlyI	GAGTC	2 cut(s)	67, 530
MmeI	TCCRAC	1 cut(s)	91
Mox20I	TGGCCA	2 cut(s)	33, 797
Mph1103I	ATGCAT	1 cut(s)	174
MscI	TGGCCA	2 cut(s)	33, 797
MseI	TTAA	3 cut(s)	327, 651, 815
Msp20I	TGGCCA	2 cut(s)	33, 797
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	3 cut(s)	97, 201, 429
MvaI	CCWGG	2 cut(s)	201, 429
MwoI	GCNNNNNNNGC	4 cut(s)	284, 635, 742, 794
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
NlaIII	CATG	6 cut(s)	16, 95, 167, 176, 236, 740
NlaIV	GGNNCC	5 cut(s)	319, 453, 532, 697, 767
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	4 cut(s)	16, 95, 176, 740
PaeI	GCATGC	3 cut(s)	95, 176, 740
PaeR7I	CTCGAG	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	944
PciI	ACATGT	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	937
PkrI	GCNGC	3 cut(s)	367, 637, 747
PleI	GAGTC	2 cut(s)	67, 529
PpsI	GAGTC	2 cut(s)	67, 529
PpuMI	RGGWCCY	1 cut(s)	452
PscI	ACATGT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	2 cut(s)	199, 427
PspGI	CCWGG	2 cut(s)	199, 427
PspN4I	GGNNCC	5 cut(s)	319, 453, 532, 697, 767
PspPI	GGNCC	4 cut(s)	197, 377, 452, 530
PspPPI	RGGWCCY	1 cut(s)	452
PspXI	VCTCGAGB	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	263, 607
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	3 cut(s)	327, 651, 815
SatI	GCNGC	3 cut(s)	366, 636, 746
Sau3AI	GATC	6 cut(s)	263, 457, 504, 547, 607, 850
Sau96I	GGNCC	4 cut(s)	197, 377, 452, 530
SchI	GAGTC	2 cut(s)	67, 530
ScrFI	CCNGG	3 cut(s)	97, 201, 429
SduI	GDGCHC	2 cut(s)	46, 322
SetI	ASST	7 cut(s)	333, 343, 457, 697, 715, 767, 843
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	518
SinI	GGWCC	3 cut(s)	377, 452, 530
SlaI	CTCGAG	1 cut(s)	518
SmlI	CTYRAG	3 cut(s)	446, 518, 854
SmoI	CTYRAG	3 cut(s)	446, 518, 854
SphI	GCATGC	3 cut(s)	95, 176, 740
Sse9I	AATT	3 cut(s)	242, 750, 899
SseBI	AGGCCT	1 cut(s)	944
SspMI	CTAG	3 cut(s)	87, 342, 551
StuI	AGGCCT	1 cut(s)	944
StyD4I	CCNGG	3 cut(s)	95, 199, 427
TaaI	ACNGT	2 cut(s)	141, 676
TaqI	TCGA	3 cut(s)	312, 519, 578
TasI	AATT	3 cut(s)	242, 750, 899
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	937
Tru1I	TTAA	3 cut(s)	327, 651, 815
Tru9I	TTAA	3 cut(s)	327, 651, 815
TscAI	CASTG	3 cut(s)	196, 645, 679
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	3 cut(s)	365, 635, 745
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	150, 249, 876, 896
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	196, 645, 679
VpaK11BI	GGWCC	3 cut(s)	377, 452, 530
XapI	RAATTY	2 cut(s)	242, 899
XceI	RCATGY	4 cut(s)	16, 95, 176, 740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	478
XspI	CTAG	3 cut(s)	87, 342, 551
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.