Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

13456932 .. 13462300

Gene Structure 5369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGTTGGCATTATTGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTCAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACTGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTTGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGCCTTTTTTGTAGTCCCACAATGTGCTATAAAGAATCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

319

Amino Acids

34.56

Weight (kDa)

5.23

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	159 - 228	2.4e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccB1I	GGYRCC	2 cut(s)	329, 707
AccI	GTMKAC	1 cut(s)	490
AcoI	YGGCCR	2 cut(s)	31, 807
AcsI	RAATTY	2 cut(s)	254, 911
AcuI	CTGAAG	1 cut(s)	875
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	2 cut(s)	340, 551
AflIII	ACRYGT	1 cut(s)	12
AjnI	CCWGG	2 cut(s)	211, 439
AluBI	AGCT	1 cut(s)	853
AluI	AGCT	1 cut(s)	853
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	343, 666
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	7 cut(s)	31, 208, 288, 430, 454, 807, 954
ApeKI	GCWGC	3 cut(s)	377, 647, 757
ApoI	RAATTY	2 cut(s)	254, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspS9I	GGNCC	4 cut(s)	209, 389, 464, 542
AsuC2I	CCSGG	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	3 cut(s)	389, 464, 542
BaeGI	GKGCMC	1 cut(s)	334
BalI	TGGCCA	2 cut(s)	33, 809
BanI	GGYRCC	2 cut(s)	329, 707
BbsI	GAAGAC	1 cut(s)	882
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	364, 659, 769
BccI	CCATC	2 cut(s)	305, 376
BcgI	CGANNNNNNTGC	2 cut(s)	896, 930
BciT130I	CCWGG	2 cut(s)	213, 441
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	343, 666
BfaI	CTAG	3 cut(s)	99, 354, 563
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	2 cut(s)	275, 619
BisI	GCNGC	3 cut(s)	378, 648, 758
BlsI	GCNGC	3 cut(s)	379, 649, 759
Bme1390I	CCNGG	3 cut(s)	109, 213, 441
Bme18I	GGWCC	3 cut(s)	389, 464, 542
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	4 cut(s)	209, 389, 464, 542
BmiI	GGNNCC	5 cut(s)	331, 465, 544, 709, 779
BmrFI	CCNGG	3 cut(s)	109, 213, 441
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	882
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	2 cut(s)	479, 887
BpuMI	CCSGG	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	211, 440, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 551
Bse1I	ACTGG	4 cut(s)	34, 34, 50, 402
Bse3DI	GCAATG	4 cut(s)	75, 301, 306, 767
BseBI	CCWGG	2 cut(s)	213, 441
BseDI	CCNNGG	3 cut(s)	211, 440, 550
BseGI	GGATG	3 cut(s)	316, 853, 865
BseLI	CCNNNNNNNGG	2 cut(s)	340, 551
BseMI	GCAATG	4 cut(s)	75, 301, 306, 767
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	4 cut(s)	34, 34, 50, 402
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	364, 659, 769
BsgI	GTGCAG	2 cut(s)	83, 666
BshFI	GGCC	7 cut(s)	33, 210, 290, 432, 456, 809, 956
BshNI	GGYRCC	2 cut(s)	329, 707
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	477, 914
BslI	CCNNNNNNNGG	2 cut(s)	340, 551
BsmAI	GTCTC	2 cut(s)	343, 666
BsmFI	GGGAC	2 cut(s)	477, 914
BsnI	GGCC	7 cut(s)	33, 210, 290, 432, 456, 809, 956
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	46, 334
Bsp143I	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
BspANI	GGCC	7 cut(s)	33, 210, 290, 432, 456, 809, 956
BspCNI	CTCAG	1 cut(s)	718
BspLI	GGNNCC	5 cut(s)	331, 465, 544, 709, 779
BspT107I	GGYRCC	2 cut(s)	329, 707
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	4 cut(s)	75, 301, 306, 767
BsrI	ACTGG	4 cut(s)	34, 34, 50, 402
BssECI	CCNNGG	3 cut(s)	211, 440, 550
BssMI	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
Bst2UI	CCWGG	2 cut(s)	213, 441
Bst4CI	ACNGT	2 cut(s)	153, 688
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	9 cut(s)	66, 105, 186, 208, 292, 398, 696, 750, 798
BstDEI	CTNAG	1 cut(s)	726
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	3 cut(s)	316, 853, 865
BstKTI	GATC	6 cut(s)	278, 472, 519, 562, 622, 865
BstMAI	GTCTC	2 cut(s)	343, 666
BstMBI	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 647, 754, 806
BstNI	CCWGG	2 cut(s)	213, 441
BstNSI	RCATGY	4 cut(s)	16, 107, 188, 752
BstSCI	CCNGG	3 cut(s)	107, 211, 439
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	364, 659, 769
BstV2I	GAAGAC	1 cut(s)	882
BstX2I	RGATCY	2 cut(s)	275, 619
BstYI	RGATCY	2 cut(s)	275, 619
BsuRI	GGCC	7 cut(s)	33, 210, 290, 432, 456, 809, 956
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	316, 853, 865
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	3 cut(s)	201, 650, 684
Cac8I	GCNNGC	9 cut(s)	66, 105, 186, 208, 292, 398, 696, 750, 798
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	4 cut(s)	209, 389, 464, 542
Csp6I	GTAC	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	6 cut(s)	13, 104, 176, 185, 245, 749
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	1 cut(s)	726
DpnI	GATC	6 cut(s)	277, 471, 518, 561, 621, 864
DpnII	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
DraIII	CACNNNGTG	1 cut(s)	938
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	31, 807
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	956
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	3 cut(s)	389, 464, 542
Eco57I	CTGAAG	1 cut(s)	875
Eco88I	CYCGRG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	211, 439
EcoT22I	ATGCAT	1 cut(s)	186
FaeI	CATG	6 cut(s)	16, 107, 179, 188, 248, 752
FaqI	GGGAC	2 cut(s)	477, 914
FatI	CATG	6 cut(s)	12, 103, 175, 184, 244, 748
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	378, 648, 758
FokI	GGATG	3 cut(s)	323, 860, 872
Fsp4HI	GCNGC	3 cut(s)	378, 648, 758
FspBI	CTAG	3 cut(s)	99, 354, 563
GluI	GCNGC	3 cut(s)	378, 648, 758
HaeIII	GGCC	7 cut(s)	33, 210, 290, 432, 456, 809, 956
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	6 cut(s)	16, 107, 179, 188, 248, 752
HinfI	GANTC	3 cut(s)	73, 533, 949
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	235, 491, 613
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	1 cut(s)	866
Hpy8I	GTNNAC	3 cut(s)	235, 491, 613
HpyAV	CCTTC	1 cut(s)	850
HpyCH4III	ACNGT	2 cut(s)	153, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 647, 754, 806
HpyF3I	CTNAG	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	16, 107, 179, 188, 248, 752
Kzo9I	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	3 cut(s)	364, 659, 769
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	3 cut(s)	99, 354, 563
MaeIII	GTNAC	3 cut(s)	356, 628, 838
MalI	GATC	6 cut(s)	277, 471, 518, 561, 621, 864
MboI	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
MboII	GAAGA	3 cut(s)	296, 887, 899
MflI	RGATCY	2 cut(s)	275, 619
MhlI	GDGCHC	2 cut(s)	46, 334
MlsI	TGGCCA	2 cut(s)	33, 809
MluCI	AATT	3 cut(s)	254, 762, 911
MluNI	TGGCCA	2 cut(s)	33, 809
MlyI	GAGTC	2 cut(s)	67, 542
MmeI	TCCRAC	1 cut(s)	103
Mox20I	TGGCCA	2 cut(s)	33, 809
Mph1103I	ATGCAT	1 cut(s)	186
MscI	TGGCCA	2 cut(s)	33, 809
MseI	TTAA	3 cut(s)	339, 663, 827
Msp20I	TGGCCA	2 cut(s)	33, 809
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	109, 213, 441
MvaI	CCWGG	2 cut(s)	213, 441
MwoI	GCNNNNNNNGC	4 cut(s)	296, 647, 754, 806
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
NlaIII	CATG	6 cut(s)	16, 107, 179, 188, 248, 752
NlaIV	GGNNCC	5 cut(s)	331, 465, 544, 709, 779
NmuCI	GTSAC	1 cut(s)	356
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	4 cut(s)	16, 107, 188, 752
PaeI	GCATGC	3 cut(s)	107, 188, 752
PaeR7I	CTCGAG	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	956
PciI	ACATGT	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	949
PkrI	GCNGC	3 cut(s)	379, 649, 759
PleI	GAGTC	2 cut(s)	67, 541
PpsI	GAGTC	2 cut(s)	67, 541
PpuMI	RGGWCCY	1 cut(s)	464
PscI	ACATGT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	211, 439
PspGI	CCWGG	2 cut(s)	211, 439
PspN4I	GGNNCC	5 cut(s)	331, 465, 544, 709, 779
PspPI	GGNCC	4 cut(s)	209, 389, 464, 542
PspPPI	RGGWCCY	1 cut(s)	464
PspXI	VCTCGAGB	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	275, 619
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	339, 663, 827
SatI	GCNGC	3 cut(s)	378, 648, 758
Sau3AI	GATC	6 cut(s)	275, 469, 516, 559, 619, 862
Sau96I	GGNCC	4 cut(s)	209, 389, 464, 542
SchI	GAGTC	2 cut(s)	67, 542
ScrFI	CCNGG	3 cut(s)	109, 213, 441
SduI	GDGCHC	2 cut(s)	46, 334
SetI	ASST	8 cut(s)	84, 345, 355, 469, 709, 727, 779, 855
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	530
SinI	GGWCC	3 cut(s)	389, 464, 542
SlaI	CTCGAG	1 cut(s)	530
SmlI	CTYRAG	3 cut(s)	458, 530, 866
SmoI	CTYRAG	3 cut(s)	458, 530, 866
SphI	GCATGC	3 cut(s)	107, 188, 752
Sse9I	AATT	3 cut(s)	254, 762, 911
SseBI	AGGCCT	1 cut(s)	956
SspMI	CTAG	3 cut(s)	99, 354, 563
StuI	AGGCCT	1 cut(s)	956
StyD4I	CCNGG	3 cut(s)	107, 211, 439
TaaI	ACNGT	2 cut(s)	153, 688
TaqI	TCGA	3 cut(s)	324, 531, 590
TasI	AATT	3 cut(s)	254, 762, 911
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	949
Tru1I	TTAA	3 cut(s)	339, 663, 827
Tru9I	TTAA	3 cut(s)	339, 663, 827
TscAI	CASTG	3 cut(s)	208, 657, 691
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	3 cut(s)	377, 647, 757
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	4 cut(s)	162, 261, 888, 908
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	3 cut(s)	208, 657, 691
VpaK11BI	GGWCC	3 cut(s)	389, 464, 542
XapI	RAATTY	2 cut(s)	254, 911
XceI	RCATGY	4 cut(s)	16, 107, 188, 752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	490
XspI	CTAG	3 cut(s)	99, 354, 563
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.