Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

45077252 .. 45080160

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTGGACTTTTTCTGACATCAATTGTTACTCATGTTGGTATCAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTGTTGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTACCTCACGGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCATCATTCCACGTCCACGACCAGATGGTCAACCTTCATTCCTGTTTCTCTCTCTTTTTTTTTTTTTTTATTCTGGGTCGGGTCGTTACTTTGGGCCGGATCACCCTTTTTTTTTTTCTTTTCTCGTTTCTTCTCCTTCTGGTTTTCTGCTGCGTTCTTGTTTCTGGTTTACAGATGGGCAGCGGCTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

335

Amino Acids

37.06

Weight (kDa)

5.32

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	146 - 182	3.6e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	840
AccB1I	GGYRCC	2 cut(s)	281, 590
AciI	CCGC	1 cut(s)	997
AclWI	GGATC	1 cut(s)	921
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	206, 794
AcuI	CTGAAG	1 cut(s)	758
AfiI	CCNNNNNNNGG	2 cut(s)	292, 470
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	163, 391
AluBI	AGCT	1 cut(s)	736
AluI	AGCT	1 cut(s)	736
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	921
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	6 cut(s)	160, 240, 382, 406, 690, 908
ApeKI	GCWGC	4 cut(s)	329, 640, 964, 994
ApoI	RAATTY	2 cut(s)	206, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	5 cut(s)	161, 341, 416, 461, 908
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	908
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	3 cut(s)	341, 416, 461
BaeGI	GKGCMC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	692
BanI	GGYRCC	2 cut(s)	281, 590
BbsI	GAAGAC	1 cut(s)	765
BbvI	GCAGC	3 cut(s)	316, 652, 951
BccI	CCATC	4 cut(s)	257, 328, 833, 983
BciT130I	CCWGG	2 cut(s)	165, 393
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	5 cut(s)	51, 306, 482, 1001, 1006
BfmI	CTRYAG	1 cut(s)	90
BglII	AGATCT	2 cut(s)	227, 538
BisI	GCNGC	5 cut(s)	330, 641, 965, 995, 998
BlsI	GCNGC	5 cut(s)	331, 642, 966, 996, 999
Bme1390I	CCNGG	3 cut(s)	61, 165, 393
Bme18I	GGWCC	3 cut(s)	341, 416, 461
BmeT110I	CYCGRG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	5 cut(s)	161, 341, 416, 461, 908
BmiI	GGNNCC	5 cut(s)	283, 417, 463, 592, 662
BmrFI	CCNGG	3 cut(s)	61, 165, 393
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	431, 770
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	163, 469
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 470
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	3 cut(s)	253, 258, 650
BseBI	CCWGG	2 cut(s)	165, 393
BseDI	CCNNGG	2 cut(s)	163, 469
BseGI	GGATG	3 cut(s)	268, 736, 748
BseLI	CCNNNNNNNGG	2 cut(s)	292, 470
BseMI	GCAATG	3 cut(s)	253, 258, 650
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	316, 652, 951
BshFI	GGCC	6 cut(s)	162, 242, 384, 408, 692, 910
BshNI	GGYRCC	2 cut(s)	281, 590
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	2 cut(s)	61, 911
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	292, 470
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	6 cut(s)	162, 242, 384, 408, 692, 910
Bso31I	GGTCTC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
BspACI	CCGC	1 cut(s)	997
BspANI	GGCC	6 cut(s)	162, 242, 384, 408, 692, 910
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	5 cut(s)	283, 417, 463, 592, 662
BspPI	GGATC	1 cut(s)	921
BspT107I	GGYRCC	2 cut(s)	281, 590
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	3 cut(s)	253, 258, 650
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	163, 469
BssMI	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
Bst2UI	CCWGG	2 cut(s)	165, 393
Bst4CI	ACNGT	2 cut(s)	105, 571
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	8 cut(s)	57, 138, 160, 244, 350, 579, 633, 681
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	268, 736, 748
BstKTI	GATC	7 cut(s)	230, 424, 438, 481, 541, 748, 916
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 637, 689
BstNI	CCWGG	2 cut(s)	165, 393
BstNSI	RCATGY	3 cut(s)	59, 140, 635
BstSCI	CCNGG	3 cut(s)	59, 163, 391
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	3 cut(s)	316, 652, 951
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	2 cut(s)	227, 538
BstYI	RGATCY	2 cut(s)	227, 538
BsuRI	GGCC	6 cut(s)	162, 242, 384, 408, 692, 910
BtgI	CCRYGG	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	3 cut(s)	268, 736, 748
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	8 cut(s)	57, 138, 160, 244, 350, 579, 633, 681
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	5 cut(s)	161, 341, 416, 461, 908
CseI	GACGC	1 cut(s)	802
CsiI	ACCWGGT	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	6 cut(s)	33, 56, 128, 137, 197, 632
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	7 cut(s)	229, 423, 437, 480, 540, 747, 915
DpnII	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
DrdI	GACNNNNNNGTC	1 cut(s)	840
DseDI	GACNNNNNNGTC	1 cut(s)	840
EaeI	YGGCCR	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	3 cut(s)	341, 416, 461
Eco57I	CTGAAG	1 cut(s)	758
Eco88I	CYCGRG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	163, 391
EcoT22I	ATGCAT	1 cut(s)	138
FaeI	CATG	6 cut(s)	36, 59, 131, 140, 200, 635
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	6 cut(s)	32, 55, 127, 136, 196, 631
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	5 cut(s)	330, 641, 965, 995, 998
FokI	GGATG	3 cut(s)	275, 743, 755
Fsp4HI	GCNGC	5 cut(s)	330, 641, 965, 995, 998
FspBI	CTAG	5 cut(s)	51, 306, 482, 1001, 1006
GluI	GCNGC	5 cut(s)	330, 641, 965, 995, 998
HaeIII	GGCC	6 cut(s)	162, 242, 384, 408, 692, 910
HapII	CCGG	2 cut(s)	61, 911
HgaI	GACGC	1 cut(s)	802
Hin1II	CATG	6 cut(s)	36, 59, 131, 140, 200, 635
HincII	GTYRAC	1 cut(s)	845
HindII	GTYRAC	1 cut(s)	845
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	2 cut(s)	61, 911
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	7 cut(s)	6, 187, 532, 803, 830, 845, 984
Hpy188I	TCNGA	2 cut(s)	16, 366
Hpy188III	TCNNGA	1 cut(s)	749
Hpy8I	GTNNAC	7 cut(s)	6, 187, 532, 803, 830, 845, 984
HpyAV	CCTTC	3 cut(s)	733, 858, 960
HpyCH4III	ACNGT	2 cut(s)	105, 571
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	8 cut(s)	136, 251, 332, 631, 635, 650, 655, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 637, 689
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	6 cut(s)	36, 59, 131, 140, 200, 635
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
Lsp1109I	GCAGC	3 cut(s)	316, 652, 951
LweI	GCATC	1 cut(s)	160
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	5 cut(s)	51, 306, 482, 1001, 1006
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	5 cut(s)	26, 308, 547, 721, 899
MalI	GATC	7 cut(s)	229, 423, 437, 480, 540, 747, 915
MboI	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
MboII	GAAGA	4 cut(s)	248, 770, 782, 936
MfeI	CAATTG	1 cut(s)	22
MflI	RGATCY	2 cut(s)	227, 538
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	4 cut(s)	22, 206, 645, 794
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	55
Mox20I	TGGCCA	1 cut(s)	692
Mph1103I	ATGCAT	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	3 cut(s)	180, 291, 710
Msp20I	TGGCCA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	997
MspI	CCGG	2 cut(s)	61, 911
MspR9I	CCNGG	3 cut(s)	61, 165, 393
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	165, 393
MwoI	GCNNNNNNNGC	3 cut(s)	248, 637, 689
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
NlaIII	CATG	6 cut(s)	36, 59, 131, 140, 200, 635
NlaIV	GGNNCC	5 cut(s)	283, 417, 463, 592, 662
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	3 cut(s)	59, 140, 635
PaeI	GCATGC	3 cut(s)	59, 140, 635
PaeR7I	CTCGAG	1 cut(s)	449
PkrI	GCNGC	5 cut(s)	331, 642, 966, 996, 999
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	163, 391
PspGI	CCWGG	2 cut(s)	163, 391
PspN4I	GGNNCC	5 cut(s)	283, 417, 463, 592, 662
PspPI	GGNCC	5 cut(s)	161, 341, 416, 461, 908
PspPPI	RGGWCCY	1 cut(s)	416
PspXI	VCTCGAGB	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	227, 538
SaqAI	TTAA	3 cut(s)	180, 291, 710
SatI	GCNGC	5 cut(s)	330, 641, 965, 995, 998
Sau3AI	GATC	7 cut(s)	227, 421, 435, 478, 538, 745, 913
Sau96I	GGNCC	5 cut(s)	161, 341, 416, 461, 908
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	61, 165, 393
SduI	GDGCHC	1 cut(s)	286
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	3 cut(s)	341, 416, 461
SlaI	CTCGAG	1 cut(s)	449
SmlI	CTYRAG	3 cut(s)	410, 449, 749
SmoI	CTYRAG	3 cut(s)	410, 449, 749
SphI	GCATGC	3 cut(s)	59, 140, 635
Sse9I	AATT	4 cut(s)	22, 206, 645, 794
SsiI	CCGC	1 cut(s)	997
SspMI	CTAG	5 cut(s)	51, 306, 482, 1001, 1006
StyD4I	CCNGG	3 cut(s)	59, 163, 391
TaaI	ACNGT	2 cut(s)	105, 571
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	3 cut(s)	276, 450, 509
TasI	AATT	4 cut(s)	22, 206, 645, 794
TauI	GCSGC	1 cut(s)	1000
Tru1I	TTAA	3 cut(s)	180, 291, 710
Tru9I	TTAA	3 cut(s)	180, 291, 710
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	4 cut(s)	329, 640, 964, 994
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	5 cut(s)	114, 213, 771, 791, 840
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	3 cut(s)	341, 416, 461
XapI	RAATTY	2 cut(s)	206, 794
XceI	RCATGY	3 cut(s)	59, 140, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	449
XspI	CTAG	5 cut(s)	51, 306, 482, 1001, 1006
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.