Rh2CG157400

Splicing factor U2af large subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
13661970 .. 13667323
5354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG157400.1

Sequence Viewer

Length: 1116 bp
ATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTTACGGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCATCATTCCACGTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGTACAGGGATGAATGGCAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACAAGTTTGCCCAGGGTGACTATGACGCTAGTTGCTAG

Protein Analysis

371

Amino Acids

40.03

Weight (kDa)

5.19

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 155 - 224 3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 945
AccB1I GGYRCC 2 cut(s) 317, 695
AccI GTMKAC 1 cut(s) 478
AccIII TCCGGA 1 cut(s) 1072
AciI CCGC 1 cut(s) 989
AcoI YGGCCR 2 cut(s) 31, 795
AcsI RAATTY 3 cut(s) 242, 899, 1037
AcuI CTGAAG 1 cut(s) 863
AfaI GTAC 2 cut(s) 501, 1018
AfiI CCNNNNNNNGG 5 cut(s) 328, 539, 959, 965, 1020
AflIII ACRYGT 1 cut(s) 12
AjiI CACGTC 1 cut(s) 932
AjnI CCWGG 4 cut(s) 199, 427, 958, 1089
AluBI AGCT 1 cut(s) 841
AluI AGCT 1 cut(s) 841
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 331, 654
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 518
Aor13HI TCCGGA 1 cut(s) 1072
AoxI GGCC 6 cut(s) 31, 196, 276, 418, 442, 795
ApeKI GCWGC 3 cut(s) 365, 635, 745
ApoI RAATTY 3 cut(s) 242, 899, 1037
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 4 cut(s) 197, 377, 452, 530
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 948, 1106
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 3 cut(s) 377, 452, 530
BaeGI GKGCMC 1 cut(s) 322
BalI TGGCCA 2 cut(s) 33, 797
BanI GGYRCC 2 cut(s) 317, 695
BbsI GAAGAC 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 352, 647, 757
BccI CCATC 4 cut(s) 293, 364, 938, 992
BciT130I CCWGG 4 cut(s) 201, 429, 960, 1091
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 331, 654
BfaI CTAG 5 cut(s) 87, 342, 551, 1107, 1114
BfmI CTRYAG 1 cut(s) 126
BglII AGATCT 2 cut(s) 263, 607
BisI GCNGC 3 cut(s) 366, 636, 746
BlsI GCNGC 3 cut(s) 367, 637, 747
Bme1390I CCNGG 5 cut(s) 97, 201, 429, 960, 1091
Bme18I GGWCC 3 cut(s) 377, 452, 530
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 932
BmgT120I GGNCC 4 cut(s) 197, 377, 452, 530
BmiI GGNNCC 6 cut(s) 319, 453, 532, 697, 767, 1003
BmrFI CCNGG 5 cut(s) 97, 201, 429, 960, 1091
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 870
BpmI CTGGAG 1 cut(s) 981
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 467, 875
BpuMI CCSGG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 4 cut(s) 199, 538, 1089, 1090
BsaWI WCCGGW 1 cut(s) 1072
BsaXI ACNNNNNCTCC 6 cut(s) 195, 225, 328, 358, 1067, 1097
Bsc4I CCNNNNNNNGG 5 cut(s) 328, 539, 959, 965, 1020
Bse1I ACTGG 5 cut(s) 34, 34, 50, 390, 1052
Bse3DI GCAATG 4 cut(s) 75, 289, 294, 755
BseAI TCCGGA 1 cut(s) 1072
BseBI CCWGG 4 cut(s) 201, 429, 960, 1091
BseDI CCNNGG 4 cut(s) 199, 538, 1089, 1090
BseGI GGATG 5 cut(s) 304, 841, 853, 997, 1029
BseLI CCNNNNNNNGG 5 cut(s) 328, 539, 959, 965, 1020
BseMI GCAATG 4 cut(s) 75, 289, 294, 755
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 5 cut(s) 34, 34, 50, 390, 1052
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 3 cut(s) 352, 647, 757
BsgI GTGCAG 2 cut(s) 83, 654
BshFI GGCC 6 cut(s) 33, 198, 278, 420, 444, 797
BshNI GGYRCC 2 cut(s) 317, 695
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 97, 1073
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 5 cut(s) 328, 539, 959, 965, 1020
BsmAI GTCTC 2 cut(s) 331, 654
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 6 cut(s) 33, 198, 278, 420, 444, 797
Bso31I GGTCTC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 46, 322
Bsp13I TCCGGA 1 cut(s) 1072
Bsp143I GATC 6 cut(s) 263, 457, 504, 547, 607, 850
BspACI CCGC 1 cut(s) 989
BspANI GGCC 6 cut(s) 33, 198, 278, 420, 444, 797
BspCNI CTCAG 1 cut(s) 706
BspEI TCCGGA 1 cut(s) 1072
BspLI GGNNCC 6 cut(s) 319, 453, 532, 697, 767, 1003
BspT107I GGYRCC 2 cut(s) 317, 695
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 4 cut(s) 75, 289, 294, 755
BsrI ACTGG 5 cut(s) 34, 34, 50, 390, 1052
BssECI CCNNGG 4 cut(s) 199, 538, 1089, 1090
BssMI GATC 6 cut(s) 263, 457, 504, 547, 607, 850
Bst2UI CCWGG 4 cut(s) 201, 429, 960, 1091
Bst4CI ACNGT 2 cut(s) 141, 676
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 9 cut(s) 66, 93, 174, 196, 280, 386, 684, 738, 786
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 5 cut(s) 304, 841, 853, 997, 1029
BstKTI GATC 6 cut(s) 266, 460, 507, 550, 610, 853
BstMAI GTCTC 2 cut(s) 331, 654
BstMBI GATC 6 cut(s) 263, 457, 504, 547, 607, 850
BstMWI GCNNNNNNNGC 4 cut(s) 284, 635, 742, 794
BstNI CCWGG 4 cut(s) 201, 429, 960, 1091
BstNSI RCATGY 4 cut(s) 16, 95, 176, 740
BstSCI CCNGG 5 cut(s) 95, 199, 427, 958, 1089
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 352, 647, 757
BstV2I GAAGAC 1 cut(s) 870
BstX2I RGATCY 2 cut(s) 263, 607
BstYI RGATCY 2 cut(s) 263, 607
BsuRI GGCC 6 cut(s) 33, 198, 278, 420, 444, 797
BtgI CCRYGG 1 cut(s) 538
BtrI CACGTC 1 cut(s) 932
BtsCI GGATG 5 cut(s) 304, 841, 853, 997, 1029
BtsI GCAGTG 2 cut(s) 189, 1068
BtsIMutI CAGTG 3 cut(s) 189, 638, 1068
Cac8I GCNNGC 9 cut(s) 66, 93, 174, 196, 280, 386, 684, 738, 786
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 4 cut(s) 197, 377, 452, 530
CseI GACGC 1 cut(s) 907
CsiI ACCWGGT 1 cut(s) 427
Csp6I GTAC 2 cut(s) 500, 1017
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 6 cut(s) 13, 92, 164, 173, 233, 737
CviQI GTAC 2 cut(s) 500, 1017
DdeI CTNAG 1 cut(s) 714
DpnI GATC 6 cut(s) 265, 459, 506, 549, 609, 852
DpnII GATC 6 cut(s) 263, 457, 504, 547, 607, 850
DrdI GACNNNNNNGTC 1 cut(s) 945
DseDI GACNNNNNNGTC 1 cut(s) 945
EaeI YGGCCR 2 cut(s) 31, 795
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 3 cut(s) 377, 452, 530
Eco57I CTGAAG 1 cut(s) 863
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 4 cut(s) 199, 427, 958, 1089
EcoT22I ATGCAT 1 cut(s) 174
FaeI CATG 6 cut(s) 16, 95, 167, 176, 236, 740
FaqI GGGAC 1 cut(s) 465
FatI CATG 6 cut(s) 12, 91, 163, 172, 232, 736
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 366, 636, 746
FokI GGATG 5 cut(s) 311, 848, 860, 1004, 1036
Fsp4HI GCNGC 3 cut(s) 366, 636, 746
FspBI CTAG 5 cut(s) 87, 342, 551, 1107, 1114
GluI GCNGC 3 cut(s) 366, 636, 746
GsuI CTGGAG 1 cut(s) 981
HaeIII GGCC 6 cut(s) 33, 198, 278, 420, 444, 797
HapII CCGG 2 cut(s) 97, 1073
HgaI GACGC 1 cut(s) 907
Hin1II CATG 6 cut(s) 16, 95, 167, 176, 236, 740
HincII GTYRAC 1 cut(s) 950
HindII GTYRAC 1 cut(s) 950
HinfI GANTC 3 cut(s) 73, 521, 1048
HpaII CCGG 2 cut(s) 97, 1073
HphI GGTGA 2 cut(s) 948, 1106
Hpy166II GTNNAC 6 cut(s) 223, 479, 601, 908, 935, 950
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 854, 1073
Hpy8I GTNNAC 6 cut(s) 223, 479, 601, 908, 935, 950
HpyAV CCTTC 1 cut(s) 838
HpyCH4III ACNGT 2 cut(s) 141, 676
HpyCH4IV ACGT 1 cut(s) 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 635, 742, 794
HpyF3I CTNAG 1 cut(s) 714
HpySE526I ACGT 1 cut(s) 931
Hsp92II CATG 6 cut(s) 16, 95, 167, 176, 236, 740
Kpn2I TCCGGA 1 cut(s) 1072
Kzo9I GATC 6 cut(s) 263, 457, 504, 547, 607, 850
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 3 cut(s) 352, 647, 757
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 427
MaeI CTAG 5 cut(s) 87, 342, 551, 1107, 1114
MaeII ACGT 1 cut(s) 931
MaeIII GTNAC 4 cut(s) 344, 616, 826, 1094
MalI GATC 6 cut(s) 265, 459, 506, 549, 609, 852
MboI GATC 6 cut(s) 263, 457, 504, 547, 607, 850
MboII GAAGA 3 cut(s) 284, 875, 887
MflI RGATCY 2 cut(s) 263, 607
MhlI GDGCHC 2 cut(s) 46, 322
MlsI TGGCCA 2 cut(s) 33, 797
MluCI AATT 4 cut(s) 242, 750, 899, 1037
MluNI TGGCCA 2 cut(s) 33, 797
MlyI GAGTC 2 cut(s) 67, 530
MmeI TCCRAC 2 cut(s) 91, 946
Mox20I TGGCCA 2 cut(s) 33, 797
Mph1103I ATGCAT 1 cut(s) 174
MroI TCCGGA 1 cut(s) 1072
MscI TGGCCA 2 cut(s) 33, 797
MseI TTAA 4 cut(s) 216, 327, 651, 815
Msp20I TGGCCA 2 cut(s) 33, 797
MspI CCGG 2 cut(s) 97, 1073
MspR9I CCNGG 5 cut(s) 97, 201, 429, 960, 1091
MvaI CCWGG 4 cut(s) 201, 429, 960, 1091
MwoI GCNNNNNNNGC 4 cut(s) 284, 635, 742, 794
NciI CCSGG 1 cut(s) 97
NdeII GATC 6 cut(s) 263, 457, 504, 547, 607, 850
NlaIII CATG 6 cut(s) 16, 95, 167, 176, 236, 740
NlaIV GGNNCC 6 cut(s) 319, 453, 532, 697, 767, 1003
NmuCI GTSAC 2 cut(s) 344, 1094
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 4 cut(s) 16, 95, 176, 740
PaeI GCATGC 3 cut(s) 95, 176, 740
PaeR7I CTCGAG 1 cut(s) 518
PasI CCCWGGG 1 cut(s) 1090
PciI ACATGT 1 cut(s) 12
PfeI GAWTC 1 cut(s) 1048
PkrI GCNGC 3 cut(s) 367, 637, 747
PleI GAGTC 2 cut(s) 67, 529
PpsI GAGTC 2 cut(s) 67, 529
PpuMI RGGWCCY 1 cut(s) 452
PscI ACATGT 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 4 cut(s) 199, 427, 958, 1089
PspGI CCWGG 4 cut(s) 199, 427, 958, 1089
PspN4I GGNNCC 6 cut(s) 319, 453, 532, 697, 767, 1003
PspPI GGNCC 4 cut(s) 197, 377, 452, 530
PspPPI RGGWCCY 1 cut(s) 452
PspXI VCTCGAGB 1 cut(s) 518
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 263, 607
RsaI GTAC 2 cut(s) 501, 1018
RsaNI GTAC 2 cut(s) 500, 1017
SaqAI TTAA 4 cut(s) 216, 327, 651, 815
SatI GCNGC 3 cut(s) 366, 636, 746
Sau3AI GATC 6 cut(s) 263, 457, 504, 547, 607, 850
Sau96I GGNCC 4 cut(s) 197, 377, 452, 530
SchI GAGTC 2 cut(s) 67, 530
ScrFI CCNGG 5 cut(s) 97, 201, 429, 960, 1091
SduI GDGCHC 2 cut(s) 46, 322
SexAI ACCWGGT 1 cut(s) 427
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 3 cut(s) 377, 452, 530
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 3 cut(s) 446, 518, 854
SmoI CTYRAG 3 cut(s) 446, 518, 854
SphI GCATGC 3 cut(s) 95, 176, 740
Sse9I AATT 4 cut(s) 242, 750, 899, 1037
SsiI CCGC 1 cut(s) 989
SspMI CTAG 5 cut(s) 87, 342, 551, 1107, 1114
StyD4I CCNGG 5 cut(s) 95, 199, 427, 958, 1089
TaaI ACNGT 2 cut(s) 141, 676
TaiI ACGT 1 cut(s) 934
TaqI TCGA 3 cut(s) 312, 519, 578
TasI AATT 4 cut(s) 242, 750, 899, 1037
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 1 cut(s) 1048
Tru1I TTAA 4 cut(s) 216, 327, 651, 815
Tru9I TTAA 4 cut(s) 216, 327, 651, 815
TscAI CASTG 3 cut(s) 196, 645, 1068
TseFI GTSAC 2 cut(s) 344, 1094
TseI GCWGC 3 cut(s) 365, 635, 745
Tsp45I GTSAC 2 cut(s) 344, 1094
TspDTI ATGAA 5 cut(s) 150, 249, 876, 896, 1040
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 3 cut(s) 196, 645, 1068
VpaK11BI GGWCC 3 cut(s) 377, 452, 530
XapI RAATTY 3 cut(s) 242, 899, 1037
XceI RCATGY 4 cut(s) 16, 95, 176, 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 5 cut(s) 87, 342, 551, 1107, 1114
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.