Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

11938646 .. 11943661

Gene Structure 5016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGGCCGACTACGAAGGAAGGTACGACGGTAACGGAGAGGACGCTGACGGCTCCTCTCCCCAACCGCGGAGCACTAACCATGGCGGTCTCGACGATTACAGCGATTCCAAATCTCAGCATTCCCGTGATTATGAGAGAGAATCTTCAAAGAGTAGAGAAAAGGGGCGCGATAAGGAGAGGGACAGGGACAGAGATCGGGAGAGAGACAGGGATAGGGATAGGGACAGGGACAGAGGGAGAAGCAAGGATAAAGATAGAGAGAGGGACAGAGACAGGGGTAGGGATAGGGAACGAGAAAGGGACAGAGACAGGGATCATGATCGTCATCATAGAGACCGCCACAGGGATCGTGAAAGGAGTGAGCGAAGGAGAGATAAGGATGATGATGATGATGAGGATCACTACCGTAGCCGCGACCGTGATAGGCGGAGGGATTATGACAGAGACAGGGAGGATAGGCATAGGCGCAGGTCTCGTTCCAGGGGTAGGTCTGAGCATAAATCCAGATCAAGGTCGCGTTCACGCTCACGTTCCAAAAGCAAAAGAATTAGCGGTTTTGACATGGCACCTCCTGCTTCTGCACTATTACCTGGTGCTGCTGTTCCTGTGACAGGCCAGATTCCTGGAGCTACTCCAACCATTCCTGGGATGTTCCCAAACATGTTTCCTTTGGCGACTGGCCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCATGCCCGGAGGGTGTATGTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACGGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACTGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACGGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCAGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCATCATTCCACGTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGTACAGGGATGAATGGCAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACAAGTTTGCGCAGGGTGACTATGACGCTAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

584

Amino Acids

65.43

Weight (kDa)

6.54

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	368 - 437	6e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1584
Acc16I	TGCGCA	1 cut(s)	1728
Acc36I	ACCTGC	1 cut(s)	459
AccB1I	GGYRCC	3 cut(s)	565, 956, 1334
AccI	GTMKAC	1 cut(s)	1117
AccII	CGCG	4 cut(s)	67, 168, 414, 517
AccIII	TCCGGA	1 cut(s)	1711
AciI	CCGC	8 cut(s)	65, 67, 84, 337, 412, 427, 552, 1628
AclWI	GGATC	3 cut(s)	321, 354, 405
AcoI	YGGCCR	3 cut(s)	3, 679, 1434
AcsI	RAATTY	3 cut(s)	881, 1538, 1676
AcuI	CTGAAG	2 cut(s)	1413, 1502
AfaI	GTAC	3 cut(s)	23, 1140, 1657
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	1 cut(s)	147
AjiI	CACGTC	1 cut(s)	1571
AjnI	CCWGG	7 cut(s)	479, 589, 622, 643, 838, 1066, 1597
AluBI	AGCT	2 cut(s)	629, 1480
AluI	AGCT	2 cut(s)	629, 1480
Alw21I	GWGCWC	2 cut(s)	74, 694
Alw26I	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 970, 1293
AlwI	GGATC	3 cut(s)	321, 354, 405
AlwNI	CAGNNNCTG	2 cut(s)	1073, 1259
Ama87I	CYCGRG	1 cut(s)	1157
Aor13HI	TCCGGA	1 cut(s)	1711
AoxI	GGCC	8 cut(s)	3, 613, 679, 835, 915, 1057, 1081, 1434
ApeKI	GCWGC	4 cut(s)	596, 1004, 1274, 1384
ApoI	RAATTY	3 cut(s)	881, 1538, 1676
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AspLEI	GCGC	3 cut(s)	168, 468, 1729
AspS9I	GGNCC	4 cut(s)	836, 1016, 1091, 1169
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	1587, 1745
AvaI	CYCGRG	1 cut(s)	1157
AvaII	GGWCC	3 cut(s)	1016, 1091, 1169
BaeGI	GKGCMC	1 cut(s)	961
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BalI	TGGCCA	2 cut(s)	681, 1436
BanI	GGYRCC	3 cut(s)	565, 956, 1334
BbsI	GAAGAC	1 cut(s)	1509
Bbv12I	GWGCWC	2 cut(s)	74, 694
BbvI	GCAGC	4 cut(s)	583, 991, 1286, 1396
BccI	CCATC	4 cut(s)	932, 1003, 1577, 1631
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	7 cut(s)	481, 591, 624, 645, 840, 1068, 1599
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 970, 1293
BfaI	CTAG	4 cut(s)	981, 1190, 1746, 1753
BfmI	CTRYAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	459
BglII	AGATCT	2 cut(s)	902, 1246
BisI	GCNGC	5 cut(s)	412, 597, 1005, 1275, 1385
BlsI	GCNGC	5 cut(s)	413, 598, 1006, 1276, 1386
Bme1390I	CCNGG	8 cut(s)	481, 591, 624, 645, 737, 840, 1068, 1599
Bme18I	GGWCC	3 cut(s)	1016, 1091, 1169
BmeT110I	CYCGRG	1 cut(s)	1157
BmgBI	CACGTC	1 cut(s)	1571
BmgT120I	GGNCC	4 cut(s)	836, 1016, 1091, 1169
BmiI	GGNNCC	8 cut(s)	52, 567, 958, 1092, 1171, 1336, 1406, 1642
BmrFI	CCNGG	8 cut(s)	481, 591, 624, 645, 737, 840, 1068, 1599
BmrI	ACTGGG	1 cut(s)	1023
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	1023
BpiI	GAAGAC	1 cut(s)	1509
BpmI	CTGGAG	2 cut(s)	645, 1620
Bpu10I	CCTNAGC	1 cut(s)	1353
BpuEI	CTTGAG	2 cut(s)	1106, 1514
BpuMI	CCSGG	1 cut(s)	737
BsaBI	GATNNNNATC	3 cut(s)	318, 324, 396
BsaI	GGTCTC	4 cut(s)	92, 327, 477, 970
BsaJI	CCNNGG	6 cut(s)	65, 79, 480, 644, 838, 1177
BsaWI	WCCGGW	1 cut(s)	1711
BsaXI	ACNNNNNCTCC	6 cut(s)	834, 864, 967, 997, 1706, 1736
Bse1I	ACTGG	5 cut(s)	682, 682, 698, 1029, 1691
Bse3DI	GCAATG	4 cut(s)	723, 928, 933, 1394
Bse8I	GATNNNNATC	3 cut(s)	318, 324, 396
BseAI	TCCGGA	1 cut(s)	1711
BseBI	CCWGG	7 cut(s)	481, 591, 624, 645, 840, 1068, 1599
BseDI	CCNNGG	6 cut(s)	65, 79, 480, 644, 838, 1177
BseGI	GGATG	7 cut(s)	385, 654, 943, 1480, 1492, 1636, 1668
BseJI	GATNNNNATC	3 cut(s)	318, 324, 396
BseMI	GCAATG	4 cut(s)	723, 928, 933, 1394
BseMII	CTCAG	3 cut(s)	128, 483, 1344
BseNI	ACTGG	5 cut(s)	682, 682, 698, 1029, 1691
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	961
BseXI	GCAGC	4 cut(s)	583, 991, 1286, 1396
BsgI	GTGCAG	3 cut(s)	564, 731, 1293
Bsh1236I	CGCG	4 cut(s)	67, 168, 414, 517
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	8 cut(s)	5, 615, 681, 837, 917, 1059, 1083, 1436
BshNI	GGYRCC	3 cut(s)	565, 956, 1334
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	74, 694
BsiHKCI	CYCGRG	1 cut(s)	1157
BsiSI	CCGG	2 cut(s)	737, 1712
BslFI	GGGAC	7 cut(s)	194, 200, 236, 242, 278, 314, 1104
BsmAI	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 970, 1293
BsmFI	GGGAC	7 cut(s)	194, 200, 236, 242, 278, 314, 1104
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	8 cut(s)	5, 615, 681, 837, 917, 1059, 1083, 1436
Bso31I	GGTCTC	4 cut(s)	92, 327, 477, 970
BsoBI	CYCGRG	1 cut(s)	1157
Bsp1286I	GDGCHC	3 cut(s)	74, 694, 961
Bsp13I	TCCGGA	1 cut(s)	1711
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	8 cut(s)	65, 67, 84, 337, 412, 427, 552, 1628
BspANI	GGCC	8 cut(s)	5, 615, 681, 837, 917, 1059, 1083, 1436
BspCNI	CTCAG	3 cut(s)	127, 484, 1345
BspEI	TCCGGA	1 cut(s)	1711
BspFNI	CGCG	4 cut(s)	67, 168, 414, 517
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	8 cut(s)	52, 567, 958, 1092, 1171, 1336, 1406, 1642
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	3 cut(s)	321, 354, 405
BspT107I	GGYRCC	3 cut(s)	565, 956, 1334
BspTNI	GGTCTC	4 cut(s)	92, 327, 477, 970
BsrDI	GCAATG	4 cut(s)	723, 928, 933, 1394
BsrI	ACTGG	5 cut(s)	682, 682, 698, 1029, 1691
BssECI	CCNNGG	6 cut(s)	65, 79, 480, 644, 838, 1177
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	7 cut(s)	481, 591, 624, 645, 840, 1068, 1599
Bst4CI	ACNGT	5 cut(s)	29, 407, 419, 780, 1315
Bst6I	CTCTTC	1 cut(s)	906
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	9 cut(s)	714, 733, 813, 835, 919, 1025, 1323, 1377, 1425
BstDEI	CTNAG	3 cut(s)	114, 492, 1353
BstDSI	CCRYGG	3 cut(s)	65, 79, 1177
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	7 cut(s)	385, 654, 943, 1480, 1492, 1636, 1668
BstFNI	CGCG	4 cut(s)	67, 168, 414, 517
BstHHI	GCGC	3 cut(s)	168, 468, 1729
BstMAI	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 970, 1293
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	5 cut(s)	572, 923, 1274, 1381, 1433
BstNI	CCWGG	7 cut(s)	481, 591, 624, 645, 840, 1068, 1599
BstNSI	RCATGY	4 cut(s)	664, 735, 815, 1379
BstSCI	CCNGG	8 cut(s)	479, 589, 622, 643, 735, 838, 1066, 1597
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	961
BstUI	CGCG	4 cut(s)	67, 168, 414, 517
BstV1I	GCAGC	4 cut(s)	583, 991, 1286, 1396
BstV2I	GAAGAC	1 cut(s)	1509
BstX2I	RGATCY	2 cut(s)	902, 1246
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	2 cut(s)	902, 1246
BsuRI	GGCC	8 cut(s)	5, 615, 681, 837, 917, 1059, 1083, 1436
BtgI	CCRYGG	3 cut(s)	65, 79, 1177
BtrI	CACGTC	1 cut(s)	1571
BtsCI	GGATG	7 cut(s)	385, 654, 943, 1480, 1492, 1636, 1668
BtsI	GCAGTG	2 cut(s)	828, 1707
BtsIMutI	CAGTG	4 cut(s)	828, 1277, 1437, 1707
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	9 cut(s)	714, 733, 813, 835, 919, 1025, 1323, 1377, 1425
CaiI	CAGNNNCTG	2 cut(s)	1073, 1259
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	3 cut(s)	168, 468, 1729
Cfr13I	GGNCC	4 cut(s)	836, 1016, 1091, 1169
Cfr42I	CCGCGG	1 cut(s)	68
CseI	GACGC	2 cut(s)	50, 1546
CsiI	ACCWGGT	2 cut(s)	589, 1066
Csp6I	GTAC	3 cut(s)	22, 1139, 1656
CspCI	CAANNNNNGTGG	2 cut(s)	1426, 1461
CviAII	CATG	9 cut(s)	80, 317, 562, 661, 732, 803, 812, 872, 1376
CviQI	GTAC	3 cut(s)	22, 1139, 1656
DdeI	CTNAG	3 cut(s)	114, 492, 1353
DrdI	GACNNNNNNGTC	1 cut(s)	1584
DseDI	GACNNNNNNGTC	1 cut(s)	1584
EaeI	YGGCCR	3 cut(s)	3, 679, 1434
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
EciI	GGCGGA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	79
Eco31I	GGTCTC	4 cut(s)	92, 327, 477, 970
Eco47I	GGWCC	3 cut(s)	1016, 1091, 1169
Eco57I	CTGAAG	2 cut(s)	1413, 1502
Eco88I	CYCGRG	1 cut(s)	1157
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	1091
EcoRII	CCWGG	7 cut(s)	479, 589, 622, 643, 838, 1066, 1597
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	9 cut(s)	83, 320, 565, 664, 735, 806, 815, 875, 1379
FaqI	GGGAC	7 cut(s)	194, 200, 236, 242, 278, 314, 1104
FatI	CATG	9 cut(s)	79, 316, 561, 660, 731, 802, 811, 871, 1375
FblI	GTMKAC	1 cut(s)	1117
Fnu4HI	GCNGC	5 cut(s)	412, 597, 1005, 1275, 1385
FokI	GGATG	7 cut(s)	392, 661, 950, 1487, 1499, 1643, 1675
Fsp4HI	GCNGC	5 cut(s)	412, 597, 1005, 1275, 1385
FspBI	CTAG	4 cut(s)	981, 1190, 1746, 1753
FspI	TGCGCA	1 cut(s)	1728
GlaI	GCGC	3 cut(s)	167, 467, 1728
GluI	GCNGC	5 cut(s)	412, 597, 1005, 1275, 1385
GsuI	CTGGAG	2 cut(s)	645, 1620
HaeIII	GGCC	8 cut(s)	5, 615, 681, 837, 917, 1059, 1083, 1436
HapII	CCGG	2 cut(s)	737, 1712
HgaI	GACGC	2 cut(s)	50, 1546
HhaI	GCGC	3 cut(s)	168, 468, 1729
Hin1II	CATG	9 cut(s)	83, 320, 565, 664, 735, 806, 815, 875, 1379
Hin6I	GCGC	3 cut(s)	166, 466, 1727
HinP1I	GCGC	3 cut(s)	166, 466, 1727
HincII	GTYRAC	1 cut(s)	1589
HindII	GTYRAC	1 cut(s)	1589
HinfI	GANTC	6 cut(s)	104, 140, 619, 721, 1160, 1687
HpaII	CCGG	2 cut(s)	737, 1712
HphI	GGTGA	2 cut(s)	1587, 1745
Hpy166II	GTNNAC	7 cut(s)	521, 862, 1118, 1240, 1547, 1574, 1589
Hpy188I	TCNGA	2 cut(s)	493, 1041
Hpy188III	TCNNGA	7 cut(s)	89, 197, 317, 350, 504, 1493, 1712
Hpy8I	GTNNAC	7 cut(s)	521, 862, 1118, 1240, 1547, 1574, 1589
Hpy99I	CGWCG	2 cut(s)	29, 95
HpyAV	CCTTC	4 cut(s)	8, 12, 360, 1477
HpyCH4III	ACNGT	5 cut(s)	29, 407, 419, 780, 1315
HpyCH4IV	ACGT	2 cut(s)	529, 1570
HpyF10VI	GCNNNNNNNGC	5 cut(s)	572, 923, 1274, 1381, 1433
HpyF3I	CTNAG	3 cut(s)	114, 492, 1353
HpySE526I	ACGT	2 cut(s)	529, 1570
Hsp92II	CATG	9 cut(s)	83, 320, 565, 664, 735, 806, 815, 875, 1379
HspAI	GCGC	3 cut(s)	166, 466, 1727
Kpn2I	TCCGGA	1 cut(s)	1711
KspI	CCGCGG	1 cut(s)	68
LmnI	GCTCC	4 cut(s)	56, 69, 626, 689
Lsp1109I	GCAGC	4 cut(s)	583, 991, 1286, 1396
LweI	GCATC	1 cut(s)	835
MabI	ACCWGGT	2 cut(s)	589, 1066
MaeI	CTAG	4 cut(s)	981, 1190, 1746, 1753
MaeII	ACGT	2 cut(s)	529, 1570
MaeIII	GTNAC	6 cut(s)	29, 607, 983, 1255, 1465, 1733
MboII	GAAGA	4 cut(s)	135, 923, 1514, 1526
MflI	RGATCY	2 cut(s)	902, 1246
MhlI	GDGCHC	3 cut(s)	74, 694, 961
MlsI	TGGCCA	2 cut(s)	681, 1436
MluCI	AATT	5 cut(s)	546, 881, 1389, 1538, 1676
MluNI	TGGCCA	2 cut(s)	681, 1436
MlyI	GAGTC	2 cut(s)	715, 1169
MmeI	TCCRAC	2 cut(s)	659, 1585
Mox20I	TGGCCA	2 cut(s)	681, 1436
Mph1103I	ATGCAT	1 cut(s)	813
MroI	TCCGGA	1 cut(s)	1711
MscI	TGGCCA	2 cut(s)	681, 1436
MseI	TTAA	4 cut(s)	855, 966, 1290, 1454
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	2 cut(s)	681, 1436
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	737, 1712
MspR9I	CCNGG	8 cut(s)	481, 591, 624, 645, 737, 840, 1068, 1599
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	7 cut(s)	481, 591, 624, 645, 840, 1068, 1599
MvnI	CGCG	4 cut(s)	67, 168, 414, 517
MwoI	GCNNNNNNNGC	5 cut(s)	572, 923, 1274, 1381, 1433
NciI	CCSGG	1 cut(s)	737
NcoI	CCATGG	1 cut(s)	79
NlaIII	CATG	9 cut(s)	83, 320, 565, 664, 735, 806, 815, 875, 1379
NlaIV	GGNNCC	8 cut(s)	52, 567, 958, 1092, 1171, 1336, 1406, 1642
NmuCI	GTSAC	3 cut(s)	607, 983, 1733
NsbI	TGCGCA	1 cut(s)	1728
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	4 cut(s)	664, 735, 815, 1379
PaeI	GCATGC	3 cut(s)	735, 815, 1379
PaeR7I	CTCGAG	1 cut(s)	1157
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	104, 140, 619, 1687
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	5 cut(s)	413, 598, 1006, 1276, 1386
PleI	GAGTC	2 cut(s)	715, 1168
PpsI	GAGTC	2 cut(s)	715, 1168
PpuMI	RGGWCCY	1 cut(s)	1091
PscI	ACATGT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	7 cut(s)	479, 589, 622, 643, 838, 1066, 1597
PspGI	CCWGG	7 cut(s)	479, 589, 622, 643, 838, 1066, 1597
PspN4I	GGNNCC	8 cut(s)	52, 567, 958, 1092, 1171, 1336, 1406, 1642
PspPI	GGNCC	4 cut(s)	836, 1016, 1091, 1169
PspPPI	RGGWCCY	1 cut(s)	1091
PspXI	VCTCGAGB	1 cut(s)	1157
PstNI	CAGNNNCTG	2 cut(s)	1073, 1259
PsuI	RGATCY	2 cut(s)	902, 1246
RsaI	GTAC	3 cut(s)	23, 1140, 1657
RsaNI	GTAC	3 cut(s)	22, 1139, 1656
RseI	CAYNNNNRTG	1 cut(s)	123
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	855, 966, 1290, 1454
SatI	GCNGC	5 cut(s)	412, 597, 1005, 1275, 1385
Sau96I	GGNCC	4 cut(s)	836, 1016, 1091, 1169
SchI	GAGTC	2 cut(s)	715, 1169
ScrFI	CCNGG	8 cut(s)	481, 591, 624, 645, 737, 840, 1068, 1599
SduI	GDGCHC	3 cut(s)	74, 694, 961
SexAI	ACCWGGT	2 cut(s)	589, 1066
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	1 cut(s)	765
Sfr274I	CTCGAG	1 cut(s)	1157
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	3 cut(s)	1016, 1091, 1169
SlaI	CTCGAG	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	3 cut(s)	1085, 1157, 1493
SmoI	CTYRAG	3 cut(s)	1085, 1157, 1493
SphI	GCATGC	3 cut(s)	735, 815, 1379
Sse9I	AATT	5 cut(s)	546, 881, 1389, 1538, 1676
SsiI	CCGC	8 cut(s)	65, 67, 84, 337, 412, 427, 552, 1628
SspMI	CTAG	4 cut(s)	981, 1190, 1746, 1753
StyD4I	CCNGG	8 cut(s)	479, 589, 622, 643, 735, 838, 1066, 1597
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	29, 407, 419, 780, 1315
TaiI	ACGT	2 cut(s)	532, 1573
TaqI	TCGA	4 cut(s)	90, 951, 1158, 1217
TasI	AATT	5 cut(s)	546, 881, 1389, 1538, 1676
TatI	WGTACW	1 cut(s)	1138
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	4 cut(s)	104, 140, 619, 1687
Tru1I	TTAA	4 cut(s)	855, 966, 1290, 1454
Tru9I	TTAA	4 cut(s)	855, 966, 1290, 1454
TscAI	CASTG	4 cut(s)	835, 1284, 1437, 1707
TseFI	GTSAC	3 cut(s)	607, 983, 1733
TseI	GCWGC	4 cut(s)	596, 1004, 1274, 1384
Tsp45I	GTSAC	3 cut(s)	607, 983, 1733
TspDTI	ATGAA	5 cut(s)	789, 888, 1515, 1535, 1679
TspGWI	ACGGA	3 cut(s)	48, 1148, 1166
TspRI	CASTG	4 cut(s)	835, 1284, 1437, 1707
VpaK11BI	GGWCC	3 cut(s)	1016, 1091, 1169
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	3 cut(s)	881, 1538, 1676
XceI	RCATGY	4 cut(s)	664, 735, 815, 1379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XhoI	CTCGAG	1 cut(s)	1157
XmiI	GTMKAC	1 cut(s)	1117
XspI	CTAG	4 cut(s)	981, 1190, 1746, 1753
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.