Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8319619.1

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

81 .. 914

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8319619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgcatgctattggagggaacactgctggcccaggagatgctgttgttaatgtttacatcaaccatgaaaaaaaatttgcctttgtggagatgagatctgtggaagaggccagcaatgcaatggctttggatgggattattttcgagggtgcccctgttaaggttaggagacctagtgactacaacccatctcttgctgcaacacttggtccaagccagcccagtccaaatctgaacttggctaatgtcggcctgacaccaggttctgctggtggccttgagggacctgatcgcatttttgttggtggtctaccctattactttacagaagtacagatcaaggagttgctcgagtcttttggacccctccgtggttttgatctagtgaaagatagggaaacaggaaattcgaaaggatatgccttttgtgtttaccaagatctttcagttaccgacatagcctgtgcagcactgaatgggattaaaatgggagacaagaccctcacggtcaggcgtgctaatcaaggtgccaaccagccaaaacctgagcaagagagtgttttgttgcatgcacagcagcaaattgcattgcaggtttgtgaaaatatccatttatttttttcatctcttatggacaggtttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

23.2

Weight (kDa)

5.38

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	583
AccB1I	GGYRCC	2 cut(s)	149, 527
AccI	GTMKAC	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	74, 406
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	160, 371
AjnI	CCWGG	2 cut(s)	31, 259
Alw26I	GTCTC	2 cut(s)	163, 486
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	28, 108, 250, 274
ApeKI	GCWGC	3 cut(s)	197, 467, 577
ApoI	RAATTY	2 cut(s)	74, 406
AspS9I	GGNCC	4 cut(s)	29, 209, 284, 362
AsuII	TTCGAA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	209, 284, 362
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	149, 527
BbvI	GCAGC	3 cut(s)	184, 479, 589
BccI	CCATC	2 cut(s)	125, 196
BciT130I	CCWGG	2 cut(s)	33, 261
BcoDI	GTCTC	2 cut(s)	163, 486
BfaI	CTAG	2 cut(s)	174, 383
BfuAI	ACCTGC	1 cut(s)	583
BglII	AGATCT	2 cut(s)	95, 439
BisI	GCNGC	3 cut(s)	198, 468, 578
BlsI	GCNGC	3 cut(s)	199, 469, 579
Bme1390I	CCNGG	2 cut(s)	33, 261
Bme18I	GGWCC	3 cut(s)	209, 284, 362
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	4 cut(s)	29, 209, 284, 362
BmiI	GGNNCC	4 cut(s)	151, 285, 364, 529
BmrFI	CCNGG	2 cut(s)	33, 261
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	31, 370
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 160, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 371
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	3 cut(s)	121, 126, 587
BseBI	CCWGG	2 cut(s)	33, 261
BseDI	CCNNGG	2 cut(s)	31, 370
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	160, 371
BseMI	GCAATG	3 cut(s)	121, 126, 587
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	184, 479, 589
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	4 cut(s)	30, 110, 252, 276
BshNI	GGYRCC	2 cut(s)	149, 527
BsiHKCI	CYCGRG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	160, 371
BsmAI	GTCTC	2 cut(s)	163, 486
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	30, 110, 252, 276
Bso31I	GGTCTC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	5 cut(s)	95, 289, 336, 379, 439
BspANI	GGCC	4 cut(s)	30, 110, 252, 276
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	4 cut(s)	151, 285, 364, 529
BspMI	ACCTGC	1 cut(s)	583
BspT104I	TTCGAA	1 cut(s)	410
BspT107I	GGYRCC	2 cut(s)	149, 527
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	3 cut(s)	121, 126, 587
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	31, 370
BssMI	GATC	5 cut(s)	95, 289, 336, 379, 439
Bst2UI	CCWGG	2 cut(s)	33, 261
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	6 cut(s)	6, 28, 112, 218, 516, 570
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	5 cut(s)	98, 292, 339, 382, 442
BstMAI	GTCTC	2 cut(s)	163, 486
BstMBI	GATC	5 cut(s)	95, 289, 336, 379, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 467, 574
BstNI	CCWGG	2 cut(s)	33, 261
BstNSI	RCATGY	2 cut(s)	8, 572
BstSCI	CCNGG	2 cut(s)	31, 259
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	3 cut(s)	184, 479, 589
BstX2I	RGATCY	2 cut(s)	95, 439
BstYI	RGATCY	2 cut(s)	95, 439
BsuRI	GGCC	4 cut(s)	30, 110, 252, 276
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 470
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	6 cut(s)	6, 28, 112, 218, 516, 570
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	4 cut(s)	29, 209, 284, 362
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	3 cut(s)	5, 65, 569
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	5 cut(s)	97, 291, 338, 381, 441
DpnII	GATC	5 cut(s)	95, 289, 336, 379, 439
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	209, 284, 362
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	31, 259
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 68, 572
FaiI	YATR	6 cut(s)	6, 66, 420, 458, 570, 632
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	4, 64, 568
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	198, 468, 578
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	198, 468, 578
FspBI	CTAG	2 cut(s)	174, 383
GluI	GCNGC	3 cut(s)	198, 468, 578
HaeIII	GGCC	4 cut(s)	30, 110, 252, 276
Hin1II	CATG	3 cut(s)	8, 68, 572
HinfI	GANTC	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	55, 311, 433
Hpy188I	TCNGA	1 cut(s)	234
Hpy8I	GTNNAC	3 cut(s)	55, 311, 433
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	8 cut(s)	4, 119, 200, 467, 568, 572, 587, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 467, 574
HpyF3I	CTNAG	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	8, 68, 572
Kzo9I	GATC	5 cut(s)	95, 289, 336, 379, 439
Lsp1109I	GCAGC	3 cut(s)	184, 479, 589
LweI	GCATC	1 cut(s)	28
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	2 cut(s)	174, 383
MaeIII	GTNAC	2 cut(s)	176, 448
MalI	GATC	5 cut(s)	97, 291, 338, 381, 441
MboI	GATC	5 cut(s)	95, 289, 336, 379, 439
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	2 cut(s)	95, 439
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	74, 406, 582
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	6 cut(s)	8, 100, 139, 274, 377, 512
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	48, 159, 483
MspR9I	CCNGG	2 cut(s)	33, 261
MvaI	CCWGG	2 cut(s)	33, 261
MwoI	GCNNNNNNNGC	3 cut(s)	116, 467, 574
NdeII	GATC	5 cut(s)	95, 289, 336, 379, 439
NlaIII	CATG	3 cut(s)	8, 68, 572
NlaIV	GGNNCC	4 cut(s)	151, 285, 364, 529
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 572
NspV	TTCGAA	1 cut(s)	410
PaeI	GCATGC	2 cut(s)	8, 572
PaeR7I	CTCGAG	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	199, 469, 579
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	31, 259
PspGI	CCWGG	2 cut(s)	31, 259
PspN4I	GGNNCC	4 cut(s)	151, 285, 364, 529
PspPI	GGNCC	4 cut(s)	29, 209, 284, 362
PspPPI	RGGWCCY	1 cut(s)	284
PspXI	VCTCGAGB	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	95, 439
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	48, 159, 483
SatI	GCNGC	3 cut(s)	198, 468, 578
Sau3AI	GATC	5 cut(s)	95, 289, 336, 379, 439
Sau96I	GGNCC	4 cut(s)	29, 209, 284, 362
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	33, 261
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	165, 175, 265, 289, 529, 547, 597, 641
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	28
Sfr274I	CTCGAG	1 cut(s)	350
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	3 cut(s)	209, 284, 362
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	278, 350
SmoI	CTYRAG	2 cut(s)	278, 350
SphI	GCATGC	2 cut(s)	8, 572
Sse9I	AATT	3 cut(s)	74, 406, 582
SspMI	CTAG	2 cut(s)	174, 383
StyD4I	CCNGG	2 cut(s)	31, 259
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	144, 351, 410
TasI	AATT	3 cut(s)	74, 406, 582
TatI	WGTACW	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	48, 159, 483
Tru9I	TTAA	3 cut(s)	48, 159, 483
TscAI	CASTG	2 cut(s)	28, 477
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	197, 467, 577
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	81, 612
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	28, 477
VpaK11BI	GGWCC	3 cut(s)	209, 284, 362
XapI	RAATTY	2 cut(s)	74, 406
XceI	RCATGY	2 cut(s)	8, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	2 cut(s)	174, 383
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.