Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00317

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

11543 .. 14402

Gene Structure 2860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACTCAACAGGTTGGCATTATTGTGAGAATTGCTGTTCTTTATGAACTATTTCCTATATACTACTTGTCTACTTATGTGGACTTTTCTGACATCAATTGTTACTCATGTTGGTATCAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACGGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCATCATTCCACGTCCACGACCAGATGGTCAACCTTCATGCTCTCGACTTGCAGACAACGATTCAACTACCTTTTGTAACTTTAAGTATGCTAAAGAACAACTTGAAGAAACCGCGAGCTACTTGAAATCCGAATTTGAGATGAAGGATCTTGGGAAAACTCAATTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

376

Amino Acids

41.5

Weight (kDa)

5.02

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	168 - 237	3.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	984
AccB1I	GGYRCC	2 cut(s)	356, 734
AccI	GTMKAC	2 cut(s)	71, 517
AccII	CGCG	1 cut(s)	1073
AciI	CCGC	1 cut(s)	1071
AclWI	GGATC	1 cut(s)	1113
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	3 cut(s)	281, 938, 1091
AcuI	CTGAAG	1 cut(s)	902
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	367, 578
AgsI	TTSAA	3 cut(s)	1023, 1064, 1084
AjiI	CACGTC	1 cut(s)	971
AjnI	CCWGG	2 cut(s)	238, 466
AluBI	AGCT	2 cut(s)	880, 1077
AluI	AGCT	2 cut(s)	880, 1077
Alw26I	GTCTC	2 cut(s)	370, 693
AlwI	GGATC	1 cut(s)	1113
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	5 cut(s)	235, 315, 457, 481, 834
ApeKI	GCWGC	3 cut(s)	404, 674, 784
ApoI	RAATTY	3 cut(s)	281, 938, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	4 cut(s)	236, 416, 491, 569
AsuC2I	CCSGG	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	3 cut(s)	416, 491, 569
BaeGI	GKGCMC	1 cut(s)	361
BalI	TGGCCA	1 cut(s)	836
BanI	GGYRCC	2 cut(s)	356, 734
BbsI	GAAGAC	1 cut(s)	909
BbvI	GCAGC	3 cut(s)	391, 686, 796
BccI	CCATC	3 cut(s)	332, 403, 977
BciT130I	CCWGG	2 cut(s)	240, 468
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	370, 693
BfaI	CTAG	4 cut(s)	126, 381, 590, 1129
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	2 cut(s)	302, 646
BisI	GCNGC	3 cut(s)	405, 675, 785
BlsI	GCNGC	3 cut(s)	406, 676, 786
Bme1390I	CCNGG	3 cut(s)	136, 240, 468
Bme18I	GGWCC	3 cut(s)	416, 491, 569
BmeT110I	CYCGRG	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	4 cut(s)	236, 416, 491, 569
BmiI	GGNNCC	5 cut(s)	358, 492, 571, 736, 806
BmrFI	CCNGG	3 cut(s)	136, 240, 468
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	909
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	506, 914
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	238, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 578
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	3 cut(s)	328, 333, 794
BseBI	CCWGG	2 cut(s)	240, 468
BseDI	CCNNGG	2 cut(s)	238, 577
BseGI	GGATG	3 cut(s)	343, 880, 892
BseLI	CCNNNNNNNGG	2 cut(s)	367, 578
BseMI	GCAATG	3 cut(s)	328, 333, 794
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	391, 686, 796
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	1 cut(s)	1073
BshFI	GGCC	5 cut(s)	237, 317, 459, 483, 836
BshNI	GGYRCC	2 cut(s)	356, 734
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	367, 578
BsmAI	GTCTC	2 cut(s)	370, 693
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	237, 317, 459, 483, 836
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
BspACI	CCGC	1 cut(s)	1071
BspANI	GGCC	5 cut(s)	237, 317, 459, 483, 836
BspCNI	CTCAG	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	1073
BspLI	GGNNCC	5 cut(s)	358, 492, 571, 736, 806
BspPI	GGATC	1 cut(s)	1113
BspT107I	GGYRCC	2 cut(s)	356, 734
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	3 cut(s)	328, 333, 794
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	238, 577
BssMI	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
Bst2UI	CCWGG	2 cut(s)	240, 468
Bst4CI	ACNGT	2 cut(s)	180, 715
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	9 cut(s)	132, 213, 235, 319, 425, 723, 777, 825, 1075
BstDEI	CTNAG	1 cut(s)	753
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	3 cut(s)	343, 880, 892
BstFNI	CGCG	1 cut(s)	1073
BstKTI	GATC	7 cut(s)	305, 499, 546, 589, 649, 892, 1108
BstMAI	GTCTC	2 cut(s)	370, 693
BstMBI	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 674, 781, 833
BstNI	CCWGG	2 cut(s)	240, 468
BstNSI	RCATGY	3 cut(s)	134, 215, 779
BstSCI	CCNGG	3 cut(s)	134, 238, 466
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	1 cut(s)	1073
BstV1I	GCAGC	3 cut(s)	391, 686, 796
BstV2I	GAAGAC	1 cut(s)	909
BstX2I	RGATCY	3 cut(s)	302, 646, 1105
BstYI	RGATCY	3 cut(s)	302, 646, 1105
BsuRI	GGCC	5 cut(s)	237, 317, 459, 483, 836
BtgI	CCRYGG	1 cut(s)	577
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	3 cut(s)	343, 880, 892
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	228, 677
Cac8I	GCNNGC	9 cut(s)	132, 213, 235, 319, 425, 723, 777, 825, 1075
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	4 cut(s)	236, 416, 491, 569
CseI	GACGC	1 cut(s)	946
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	539
CspCI	CAANNNNNGTGG	2 cut(s)	826, 861
CviAII	CATG	7 cut(s)	108, 131, 203, 212, 272, 776, 996
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	7 cut(s)	304, 498, 545, 588, 648, 891, 1107
DpnII	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
DrdI	GACNNNNNNGTC	1 cut(s)	984
DseDI	GACNNNNNNGTC	1 cut(s)	984
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	3 cut(s)	416, 491, 569
Eco57I	CTGAAG	1 cut(s)	902
Eco88I	CYCGRG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	238, 466
EcoT22I	ATGCAT	1 cut(s)	213
FaeI	CATG	7 cut(s)	111, 134, 206, 215, 275, 779, 999
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	7 cut(s)	107, 130, 202, 211, 271, 775, 995
FblI	GTMKAC	2 cut(s)	71, 517
Fnu4HI	GCNGC	3 cut(s)	405, 675, 785
FokI	GGATG	3 cut(s)	350, 887, 899
Fsp4HI	GCNGC	3 cut(s)	405, 675, 785
FspBI	CTAG	4 cut(s)	126, 381, 590, 1129
GluI	GCNGC	3 cut(s)	405, 675, 785
HaeIII	GGCC	5 cut(s)	237, 317, 459, 483, 836
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	946
Hin1II	CATG	7 cut(s)	111, 134, 206, 215, 275, 779, 999
HincII	GTYRAC	1 cut(s)	989
HindII	GTYRAC	1 cut(s)	989
HinfI	GANTC	3 cut(s)	4, 560, 1019
HpaII	CCGG	1 cut(s)	136
Hpy166II	GTNNAC	8 cut(s)	72, 82, 262, 518, 640, 947, 974, 989
Hpy188I	TCNGA	3 cut(s)	91, 441, 1090
Hpy188III	TCNNGA	2 cut(s)	893, 1002
Hpy8I	GTNNAC	8 cut(s)	72, 82, 262, 518, 640, 947, 974, 989
HpyAV	CCTTC	3 cut(s)	877, 1002, 1096
HpyCH4III	ACNGT	2 cut(s)	180, 715
HpyCH4IV	ACGT	1 cut(s)	970
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 674, 781, 833
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	1 cut(s)	970
Hsp92II	CATG	7 cut(s)	111, 134, 206, 215, 275, 779, 999
Kzo9I	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
Lsp1109I	GCAGC	3 cut(s)	391, 686, 796
LweI	GCATC	1 cut(s)	235
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	4 cut(s)	126, 381, 590, 1129
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	5 cut(s)	101, 383, 655, 865, 1034
MalI	GATC	7 cut(s)	304, 498, 545, 588, 648, 891, 1107
MboI	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
MboII	GAAGA	4 cut(s)	323, 914, 926, 1076
MfeI	CAATTG	1 cut(s)	97
MflI	RGATCY	3 cut(s)	302, 646, 1105
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	7 cut(s)	30, 97, 281, 789, 938, 1091, 1121
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	836
Mph1103I	ATGCAT	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	5 cut(s)	255, 366, 690, 854, 1041
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	836
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	3 cut(s)	136, 240, 468
MunI	CAATTG	1 cut(s)	97
MvaI	CCWGG	2 cut(s)	240, 468
MvnI	CGCG	1 cut(s)	1073
MwoI	GCNNNNNNNGC	4 cut(s)	323, 674, 781, 833
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
NlaIII	CATG	7 cut(s)	111, 134, 206, 215, 275, 779, 999
NlaIV	GGNNCC	5 cut(s)	358, 492, 571, 736, 806
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	3 cut(s)	134, 215, 779
PaeI	GCATGC	3 cut(s)	134, 215, 779
PaeR7I	CTCGAG	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	1019
PkrI	GCNGC	3 cut(s)	406, 676, 786
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	238, 466
PspGI	CCWGG	2 cut(s)	238, 466
PspN4I	GGNNCC	5 cut(s)	358, 492, 571, 736, 806
PspPI	GGNCC	4 cut(s)	236, 416, 491, 569
PspPPI	RGGWCCY	1 cut(s)	491
PspXI	VCTCGAGB	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	302, 646, 1105
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	5 cut(s)	255, 366, 690, 854, 1041
SatI	GCNGC	3 cut(s)	405, 675, 785
Sau3AI	GATC	7 cut(s)	302, 496, 543, 586, 646, 889, 1105
Sau96I	GGNCC	4 cut(s)	236, 416, 491, 569
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	136, 240, 468
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	557
SinI	GGWCC	3 cut(s)	416, 491, 569
SlaI	CTCGAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	3 cut(s)	485, 557, 893
SmoI	CTYRAG	3 cut(s)	485, 557, 893
SphI	GCATGC	3 cut(s)	134, 215, 779
Sse9I	AATT	7 cut(s)	30, 97, 281, 789, 938, 1091, 1121
SsiI	CCGC	1 cut(s)	1071
SspMI	CTAG	4 cut(s)	126, 381, 590, 1129
StyD4I	CCNGG	3 cut(s)	134, 238, 466
TaaI	ACNGT	2 cut(s)	180, 715
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	4 cut(s)	351, 558, 617, 1003
TasI	AATT	7 cut(s)	30, 97, 281, 789, 938, 1091, 1121
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	1019
Tru1I	TTAA	5 cut(s)	255, 366, 690, 854, 1041
Tru9I	TTAA	5 cut(s)	255, 366, 690, 854, 1041
TscAI	CASTG	2 cut(s)	235, 684
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	404, 674, 784
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	8 cut(s)	60, 189, 288, 915, 935, 984, 1114, 1115
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	235, 684
VpaK11BI	GGWCC	3 cut(s)	416, 491, 569
XapI	RAATTY	3 cut(s)	281, 938, 1091
XceI	RCATGY	3 cut(s)	134, 215, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	557
XmiI	GTMKAC	2 cut(s)	71, 517
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	4 cut(s)	126, 381, 590, 1129
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.