Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

13856831 .. 13862199

Gene Structure 5369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTCAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACTGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTTGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTAAATCTTCAGTCATTGTTACCTGCATTTTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

314

Amino Acids

34.0

Weight (kDa)

5.23

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	156 - 225	2.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	938
AccB1I	GGYRCC	2 cut(s)	320, 698
AccI	GTMKAC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	31, 798
AcsI	RAATTY	2 cut(s)	245, 902
AcuI	CTGAAG	2 cut(s)	866, 900
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	331, 542
AflIII	ACRYGT	1 cut(s)	12
AjnI	CCWGG	2 cut(s)	202, 430
AluBI	AGCT	1 cut(s)	844
AluI	AGCT	1 cut(s)	844
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	334, 657
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	6 cut(s)	31, 199, 279, 421, 445, 798
ApeKI	GCWGC	3 cut(s)	368, 638, 748
ApoI	RAATTY	2 cut(s)	245, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspS9I	GGNCC	4 cut(s)	200, 380, 455, 533
AsuC2I	CCSGG	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	3 cut(s)	380, 455, 533
BaeGI	GKGCMC	1 cut(s)	325
BalI	TGGCCA	2 cut(s)	33, 800
BanI	GGYRCC	2 cut(s)	320, 698
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	355, 650, 760
BccI	CCATC	2 cut(s)	296, 367
BciT130I	CCWGG	2 cut(s)	204, 432
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	334, 657
BfaI	CTAG	3 cut(s)	90, 345, 554
BfmI	CTRYAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	938
BglII	AGATCT	2 cut(s)	266, 610
BisI	GCNGC	3 cut(s)	369, 639, 749
BlsI	GCNGC	3 cut(s)	370, 640, 750
Bme1390I	CCNGG	3 cut(s)	100, 204, 432
Bme18I	GGWCC	3 cut(s)	380, 455, 533
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	4 cut(s)	200, 380, 455, 533
BmiI	GGNNCC	5 cut(s)	322, 456, 535, 700, 770
BmrFI	CCNGG	3 cut(s)	100, 204, 432
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	873
Bpu10I	CCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	470, 878
BpuMI	CCSGG	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	202, 431, 541
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 542
Bse1I	ACTGG	3 cut(s)	34, 53, 393
Bse3DI	GCAATG	4 cut(s)	78, 292, 297, 758
BseBI	CCWGG	2 cut(s)	204, 432
BseDI	CCNNGG	3 cut(s)	202, 431, 541
BseGI	GGATG	3 cut(s)	307, 844, 856
BseLI	CCNNNNNNNGG	2 cut(s)	331, 542
BseMI	GCAATG	4 cut(s)	78, 292, 297, 758
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	3 cut(s)	34, 53, 393
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	355, 650, 760
BsgI	GTGCAG	2 cut(s)	86, 657
BshFI	GGCC	6 cut(s)	33, 201, 281, 423, 447, 800
BshNI	GGYRCC	2 cut(s)	320, 698
BsiHKAI	GWGCWC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	331, 542
BsmAI	GTCTC	2 cut(s)	334, 657
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	6 cut(s)	33, 201, 281, 423, 447, 800
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	49, 325
Bsp143I	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
BspANI	GGCC	6 cut(s)	33, 201, 281, 423, 447, 800
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	5 cut(s)	322, 456, 535, 700, 770
BspMI	ACCTGC	1 cut(s)	938
BspT107I	GGYRCC	2 cut(s)	320, 698
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	4 cut(s)	78, 292, 297, 758
BsrI	ACTGG	3 cut(s)	34, 53, 393
BssECI	CCNNGG	3 cut(s)	202, 431, 541
BssMI	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
Bst2UI	CCWGG	2 cut(s)	204, 432
Bst4CI	ACNGT	2 cut(s)	144, 679
Bst6I	CTCTTC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	717
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	3 cut(s)	307, 844, 856
BstKTI	GATC	6 cut(s)	269, 463, 510, 553, 613, 856
BstMAI	GTCTC	2 cut(s)	334, 657
BstMBI	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 638, 745, 797
BstNI	CCWGG	2 cut(s)	204, 432
BstNSI	RCATGY	4 cut(s)	16, 98, 179, 743
BstSCI	CCNGG	3 cut(s)	98, 202, 430
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	355, 650, 760
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	266, 610
BstXI	CCANNNNNNTGG	1 cut(s)	41
BstYI	RGATCY	2 cut(s)	266, 610
BsuRI	GGCC	6 cut(s)	33, 201, 281, 423, 447, 800
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	307, 844, 856
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	3 cut(s)	192, 641, 675
BveI	ACCTGC	1 cut(s)	938
CaiI	CAGNNNCTG	1 cut(s)	437
Cfr13I	GGNCC	4 cut(s)	200, 380, 455, 533
Csp6I	GTAC	1 cut(s)	503
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	6 cut(s)	13, 95, 167, 176, 236, 740
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	6 cut(s)	268, 462, 509, 552, 612, 855
DpnII	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	31, 798
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	3 cut(s)	380, 455, 533
Eco57I	CTGAAG	2 cut(s)	866, 900
Eco88I	CYCGRG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	202, 430
EcoT22I	ATGCAT	1 cut(s)	177
FaeI	CATG	6 cut(s)	16, 98, 170, 179, 239, 743
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	6 cut(s)	12, 94, 166, 175, 235, 739
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	369, 639, 749
FokI	GGATG	3 cut(s)	314, 851, 863
Fsp4HI	GCNGC	3 cut(s)	369, 639, 749
FspBI	CTAG	3 cut(s)	90, 345, 554
GluI	GCNGC	3 cut(s)	369, 639, 749
HaeIII	GGCC	6 cut(s)	33, 201, 281, 423, 447, 800
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	6 cut(s)	16, 98, 170, 179, 239, 743
HinfI	GANTC	2 cut(s)	76, 524
HpaII	CCGG	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	226, 482, 604
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	1 cut(s)	857
Hpy8I	GTNNAC	3 cut(s)	226, 482, 604
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	2 cut(s)	144, 679
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 638, 745, 797
HpyF3I	CTNAG	1 cut(s)	717
Hsp92II	CATG	6 cut(s)	16, 98, 170, 179, 239, 743
Kzo9I	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	3 cut(s)	355, 650, 760
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	90, 345, 554
MaeIII	GTNAC	4 cut(s)	347, 619, 829, 925
MalI	GATC	6 cut(s)	268, 462, 509, 552, 612, 855
MboI	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
MboII	GAAGA	4 cut(s)	287, 878, 890, 906
MflI	RGATCY	2 cut(s)	266, 610
MhlI	GDGCHC	2 cut(s)	49, 325
MlsI	TGGCCA	2 cut(s)	33, 800
MluCI	AATT	3 cut(s)	245, 753, 902
MluNI	TGGCCA	2 cut(s)	33, 800
MlyI	GAGTC	2 cut(s)	70, 533
MmeI	TCCRAC	1 cut(s)	94
Mox20I	TGGCCA	2 cut(s)	33, 800
Mph1103I	ATGCAT	1 cut(s)	177
MscI	TGGCCA	2 cut(s)	33, 800
MseI	TTAA	3 cut(s)	330, 654, 818
Msp20I	TGGCCA	2 cut(s)	33, 800
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	3 cut(s)	100, 204, 432
MvaI	CCWGG	2 cut(s)	204, 432
MwoI	GCNNNNNNNGC	4 cut(s)	287, 638, 745, 797
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
NlaIII	CATG	6 cut(s)	16, 98, 170, 179, 239, 743
NlaIV	GGNNCC	5 cut(s)	322, 456, 535, 700, 770
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	4 cut(s)	16, 98, 179, 743
PaeI	GCATGC	3 cut(s)	98, 179, 743
PaeR7I	CTCGAG	1 cut(s)	521
PciI	ACATGT	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	370, 640, 750
PleI	GAGTC	2 cut(s)	70, 532
PpsI	GAGTC	2 cut(s)	70, 532
PpuMI	RGGWCCY	1 cut(s)	455
PscI	ACATGT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	202, 430
PspGI	CCWGG	2 cut(s)	202, 430
PspN4I	GGNNCC	5 cut(s)	322, 456, 535, 700, 770
PspPI	GGNCC	4 cut(s)	200, 380, 455, 533
PspPPI	RGGWCCY	1 cut(s)	455
PspXI	VCTCGAGB	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	266, 610
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
SaqAI	TTAA	3 cut(s)	330, 654, 818
SatI	GCNGC	3 cut(s)	369, 639, 749
Sau3AI	GATC	6 cut(s)	266, 460, 507, 550, 610, 853
Sau96I	GGNCC	4 cut(s)	200, 380, 455, 533
SchI	GAGTC	2 cut(s)	70, 533
ScrFI	CCNGG	3 cut(s)	100, 204, 432
SduI	GDGCHC	2 cut(s)	49, 325
SetI	ASST	8 cut(s)	336, 346, 460, 700, 718, 770, 846, 932
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	521
SinI	GGWCC	3 cut(s)	380, 455, 533
SlaI	CTCGAG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	449, 521, 857
SmoI	CTYRAG	3 cut(s)	449, 521, 857
SphI	GCATGC	3 cut(s)	98, 179, 743
Sse9I	AATT	3 cut(s)	245, 753, 902
SspMI	CTAG	3 cut(s)	90, 345, 554
StyD4I	CCNGG	3 cut(s)	98, 202, 430
TaaI	ACNGT	2 cut(s)	144, 679
TaqI	TCGA	3 cut(s)	315, 522, 581
TasI	AATT	3 cut(s)	245, 753, 902
TatI	WGTACW	1 cut(s)	502
Tru1I	TTAA	3 cut(s)	330, 654, 818
Tru9I	TTAA	3 cut(s)	330, 654, 818
TscAI	CASTG	3 cut(s)	199, 648, 682
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	368, 638, 748
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	153, 252, 879, 899
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	3 cut(s)	199, 648, 682
VpaK11BI	GGWCC	3 cut(s)	380, 455, 533
XapI	RAATTY	2 cut(s)	245, 902
XceI	RCATGY	4 cut(s)	16, 98, 179, 743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XhoI	CTCGAG	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	90, 345, 554
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.