RchiOBHm_Chr2g0112351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009736
Physical Location & Seq
Forward (+)
24294429 .. 24295254
826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48584

Sequence Viewer

Length: 222 bp
ATGCAGAGAGGGGACGCGGGAGAGGTAGAGGCCGGCGATGAGGGGGAGGAAGCGGAGGACGAGGAGCTAGAGGTCAGGATCGGAGGACTGGGAGGTGTTGTAGAGCCAGAGGCAGAGGCGGGCCTTGAGGAGCTGCTTGGCTTTCTTGGTCTGCATGCGCTTCCCCCTGCCACTTGGATACGCCGCCGGGGAAGGTTCTGGGCACGCCGCCCATTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.97

Weight (kDa)

4.44

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 5 cut(s) 17, 53, 119, 184, 208
AclWI GGATC 1 cut(s) 86
AluBI AGCT 2 cut(s) 67, 133
AluI AGCT 2 cut(s) 67, 133
AlwI GGATC 1 cut(s) 86
AoxI GGCC 2 cut(s) 30, 121
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 120
BciVI GTATCC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 188
BfaI CTAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 3 cut(s) 134, 184, 208
BlsI GCNGC 3 cut(s) 135, 185, 209
Bme1390I CCNGG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 188
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 77, 143
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 32, 123
BsiSI CCGG 2 cut(s) 33, 187
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 32, 123
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 5 cut(s) 17, 53, 119, 184, 208
BspANI GGCC 2 cut(s) 32, 123
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 78
BstC8I GCNNGC 4 cut(s) 34, 121, 156, 205
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 32, 123
BtgZI GCGATG 1 cut(s) 51
Cac8I GCNNGC 4 cut(s) 34, 121, 156, 205
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 23
CviAII CATG 2 cut(s) 155, 219
CviJI RGCY 6 cut(s) 32, 67, 106, 123, 133, 141
CviKI_1 RGCY 6 cut(s) 32, 67, 106, 123, 133, 141
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
FaeI CATG 2 cut(s) 158, 222
FaiI YATR 2 cut(s) 156, 220
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 154, 218
FauI CCCGC 2 cut(s) 10, 112
Fnu4HI GCNGC 3 cut(s) 134, 184, 208
Fsp4HI GCNGC 3 cut(s) 134, 184, 208
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 134, 184, 208
HaeIII GGCC 2 cut(s) 32, 123
HapII CCGG 2 cut(s) 33, 187
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 160
Hin1II CATG 2 cut(s) 158, 222
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HpaII CCGG 2 cut(s) 33, 187
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 4, 154
Hsp92II CATG 2 cut(s) 158, 222
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 64, 130
LpnPI CCDG 7 cut(s) 46, 61, 74, 120, 180, 184, 200
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 205
MroNI GCCGGC 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 2 cut(s) 33, 187
MspR9I CCNGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 17
NaeI GCCGGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 78
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 158, 222
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PdiI GCCGGC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 135, 185, 209
PspPI GGNCC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 217
SatI GCNGC 3 cut(s) 134, 184, 208
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 205
SetI ASST 6 cut(s) 27, 69, 75, 97, 135, 197
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SphI GCATGC 1 cut(s) 158
SsiI CCGC 5 cut(s) 17, 53, 119, 184, 208
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 186
TauI GCSGC 2 cut(s) 186, 210
TseI GCWGC 1 cut(s) 133
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.