Rh3BG043700

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009736
Physical Location & Seq
Forward (+)
2840023 .. 2845921
5899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG043700.1

Sequence Viewer

Length: 861 bp
ATGTATTTTTTGATCTATGTATCCGGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAGCAGCAGCAGCAATAAAGTTGGCAAAAAAGAAAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTCGGAGAGCGCCGCAACTCCAAGATATCAACAGTGGACGTCACTCTCTTCAGCCTCGGCAGCGACATGAACATCTTCCGCCACCACGGGCGCATCTTCTATGACCTCACCCCCCGCCGCTTCTCGCTGGAGGTTCCAAGGTGGCCCGGTGGCATTGCTCTTGACGGCGGCGGCCTTGGTTTCGTGGTAGAGGCTGGGGTGGGACACGACGGGAAAGTTGACTGTGACGGAATGGCCGCCGCTGGAGGTGGTCTCAGCCAGCGGCAGAGGTTGTTGTCGCCGGTGCCGGAGCTGTGTTGTTTGAGGAGGGAGGAGATTTGGGAGGATGTGTGGGGGTTGTGGAGGAGGGAATGGGCGGTGGTATGGGAAGTGGAGGAGAGGGAGGGGACGATGGCGGAGAGGGATTGGATTGCTGCTGCTTGGGGTTTGGAGGAGGTTGAGGATGAGGAGTCTAACGAGGTATCCGGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCTGAAAATGCTGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGCACTATTTGATACCATTAGGCATGAGGCAGAAAACATGACTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

286

Amino Acids

31.22

Weight (kDa)

5.05

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 5 - 57 3e-08 Pyridoxal-phosphate dependent enzyme
PALP PF00291 205 - 262 5.1e-08 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 457
AccBSI CCGCTC 1 cut(s) 799
AccI GTMKAC 1 cut(s) 809
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 176, 791
AluBI AGCT 3 cut(s) 52, 466, 667
AluI AGCT 3 cut(s) 52, 466, 667
Alw26I GTCTC 3 cut(s) 35, 431, 650
AoxI GGCC 4 cut(s) 317, 346, 408, 746
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 186, 267
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 38, 274, 653
BanI GGYRCC 1 cut(s) 457
BccI CCATC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 355
BciVI GTATCC 2 cut(s) 31, 646
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 3 cut(s) 35, 431, 650
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 187
BfuI GTATCC 2 cut(s) 31, 646
BlpI GCTNAGC 2 cut(s) 48, 663
Bme1390I CCNGG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 309, 459
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 2 cut(s) 165, 780
BmsI GCATC 1 cut(s) 276
BmuI ACTGGG 2 cut(s) 165, 780
BplI GAGNNNNNCTC 2 cut(s) 411, 443
BpmI CTGGAG 2 cut(s) 323, 438
Bpu1102I GCTNAGC 2 cut(s) 48, 663
BpuMI CCSGG 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 703
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 4 cut(s) 229, 259, 311, 349
BsaWI WCCGGW 2 cut(s) 23, 638
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 791
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 2 cut(s) 171, 786
Bse3DI GCAATG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 703
BseDI CCNNGG 4 cut(s) 229, 259, 311, 349
BseGI GGATG 2 cut(s) 505, 622
BseJI GATNNNNATC 1 cut(s) 703
BseLI CCNNNNNNNGG 2 cut(s) 176, 791
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 171, 786
BseRI GAGGAG 6 cut(s) 493, 500, 532, 563, 620, 635
BseYI CCCAGC 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 798
BshFI GGCC 4 cut(s) 319, 348, 410, 748
BshNI GGYRCC 1 cut(s) 457
BsiSI CCGG 6 cut(s) 24, 144, 321, 455, 461, 639
BslFI GGGAC 2 cut(s) 390, 574
BslI CCNNNNNNNGG 2 cut(s) 176, 791
BsmAI GTCTC 3 cut(s) 35, 431, 650
BsmFI GGGAC 2 cut(s) 390, 574
BsnI GGCC 4 cut(s) 319, 348, 410, 748
Bso31I GGTCTC 1 cut(s) 431
Bsp143I GATC 1 cut(s) 12
Bsp1720I GCTNAGC 2 cut(s) 48, 663
BspANI GGCC 4 cut(s) 319, 348, 410, 748
BspCNI CTCAG 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 309, 459
BspMAI CTGCAG 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 799
BsrDI GCAATG 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 2 cut(s) 171, 786
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 4 cut(s) 229, 259, 311, 349
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 311, 349
Bst4CI ACNGT 2 cut(s) 208, 398
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 3 cut(s) 48, 428, 663
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 505, 622
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 186, 267
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 3 cut(s) 35, 431, 650
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 6 cut(s) 104, 107, 110, 234, 719, 722
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 99
BsuI GTATCC 2 cut(s) 31, 646
BsuRI GGCC 4 cut(s) 319, 348, 410, 748
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 2 cut(s) 505, 622
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 434
CfoI GCGC 2 cut(s) 186, 267
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 318
CviAII CATG 3 cut(s) 241, 836, 850
DdeI CTNAG 3 cut(s) 48, 428, 663
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 2 cut(s) 242, 584
Eco130I CCWWGG 2 cut(s) 311, 349
Eco147I AGGCCT 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 431
Eco32I GATATC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 311, 349
ErhI CCWWGG 2 cut(s) 311, 349
FaeI CATG 3 cut(s) 244, 839, 853
FaiI YATR 6 cut(s) 18, 242, 276, 538, 837, 851
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 672, 704
FaqI GGGAC 2 cut(s) 390, 574
FatI CATG 3 cut(s) 240, 835, 849
FauI CCCGC 1 cut(s) 296
FblI GTMKAC 1 cut(s) 809
FokI GGATG 2 cut(s) 512, 629
GlaI GCGC 2 cut(s) 185, 266
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 2 cut(s) 323, 438
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 4 cut(s) 319, 348, 410, 748
HapII CCGG 6 cut(s) 24, 144, 321, 455, 461, 639
HhaI GCGC 2 cut(s) 186, 267
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 3 cut(s) 244, 839, 853
Hin6I GCGC 2 cut(s) 184, 265
HinP1I GCGC 2 cut(s) 184, 265
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 32, 84, 623, 647, 699
HpaII CCGG 6 cut(s) 24, 144, 321, 455, 461, 639
HphI GGTGA 3 cut(s) 38, 274, 653
Hpy166II GTNNAC 3 cut(s) 211, 394, 810
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 3 cut(s) 211, 394, 810
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 62, 677
HpyCH4III ACNGT 2 cut(s) 208, 398
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 101, 716, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 107, 110, 234, 719, 722
HpyF3I CTNAG 3 cut(s) 48, 428, 663
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 3 cut(s) 244, 839, 853
HspAI GCGC 2 cut(s) 184, 265
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 463
LweI GCATC 1 cut(s) 276
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 214, 398
MalI GATC 1 cut(s) 14
MbiI CCGCTC 1 cut(s) 799
MboI GATC 1 cut(s) 12
MboII GAAGA 3 cut(s) 214, 241, 262
MlyI GAGTC 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 2 cut(s) 62, 677
MspA1I CMGCKG 2 cut(s) 416, 436
MspI CCGG 6 cut(s) 24, 144, 321, 455, 461, 639
MspR9I CCNGG 1 cut(s) 321
MwoI GCNNNNNNNGC 6 cut(s) 104, 107, 110, 234, 719, 722
NciI CCSGG 1 cut(s) 321
NdeII GATC 1 cut(s) 12
NlaIII CATG 3 cut(s) 244, 839, 853
NlaIV GGNNCC 2 cut(s) 309, 459
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 214, 398
PceI AGGCCT 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 32, 84, 647, 699
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 368
PspN4I GGNNCC 2 cut(s) 309, 459
PspPI GGNCC 1 cut(s) 318
PstI CTGCAG 1 cut(s) 103
SaqAI TTAA 2 cut(s) 62, 677
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 1 cut(s) 321
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 454
SseBI AGGCCT 1 cut(s) 748
StuI AGGCCT 1 cut(s) 748
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 311, 349
TaaI ACNGT 2 cut(s) 208, 398
TaiI ACGT 1 cut(s) 216
TauI GCSGC 7 cut(s) 189, 294, 345, 348, 413, 416, 439
TfiI GAWTC 4 cut(s) 32, 84, 647, 699
Tru1I TTAA 2 cut(s) 62, 677
Tru9I TTAA 2 cut(s) 62, 677
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 214, 398
Tsp45I GTSAC 2 cut(s) 214, 398
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 248
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.