Rh3BG043800
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009736
Physical Location & Seq
Forward (+)
2846285 .. 2856772
10488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG043800.1

Sequence Viewer

Length: 369 bp
ATGGGAAAGGTGTTGCATCTGGTAAGTGCCACAAATGGGTCTTCAAAGAACCAACAGTGTGAACCAAACATCTCCAACTACTGGCCAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGAGACAGGAATTCAGACAATTGCTGTAATTCAAGCTGGCCATGGACTTCTGCAATTGGGTTCCTGCAAAATTGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

122

Amino Acids

13.16

Weight (kDa)

5.85

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 317
AciI CCGC 1 cut(s) 307
AcoI YGGCCR 2 cut(s) 83, 166
AcsI RAATTY 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 36, 81, 299
AgsI TTSAA 2 cut(s) 45, 161
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 3 cut(s) 83, 166, 254
ApeKI GCWGC 3 cut(s) 221, 230, 233
ApoI RAATTY 1 cut(s) 138
BalI TGGCCA 2 cut(s) 85, 168
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 208, 242, 245
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 125
BisI GCNGC 3 cut(s) 222, 231, 234
BlsI GCNGC 3 cut(s) 223, 232, 235
BmiI GGNNCC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 25, 88
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 81, 299
Bse1I ACTGG 2 cut(s) 86, 294
Bse8I GATNNNNATC 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 36, 81, 299
BseNI ACTGG 2 cut(s) 86, 294
BseXI GCAGC 3 cut(s) 208, 242, 245
BshFI GGCC 3 cut(s) 85, 168, 256
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 3 cut(s) 36, 81, 299
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 3 cut(s) 85, 168, 256
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 307
BspANI GGCC 3 cut(s) 85, 168, 256
BspLI GGNNCC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 86, 294
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 169
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 227, 230
BstV1I GCAGC 3 cut(s) 208, 242, 245
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 85, 168, 256
BtgI CCRYGG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 166
CviAII CATG 3 cut(s) 170, 344, 358
CviJI RGCY 4 cut(s) 85, 164, 168, 256
CviKI_1 RGCY 4 cut(s) 85, 164, 168, 256
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 83, 166
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 3 cut(s) 173, 347, 361
FaiI YATR 3 cut(s) 171, 345, 359
FatI CATG 3 cut(s) 169, 343, 357
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 222, 231, 234
Fsp4HI GCNGC 3 cut(s) 222, 231, 234
GluI GCNGC 3 cut(s) 222, 231, 234
HaeIII GGCC 3 cut(s) 85, 168, 256
HapII CCGG 1 cut(s) 267
Hin1II CATG 3 cut(s) 173, 347, 361
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 267
Hpy166II GTNNAC 2 cut(s) 62, 318
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 62, 318
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 16, 181, 195, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 230
Hsp92II CATG 3 cut(s) 173, 347, 361
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 108
Lsp1109I GCAGC 3 cut(s) 208, 242, 245
LweI GCATC 2 cut(s) 25, 88
MalI GATC 1 cut(s) 123
MbiI CCGCTC 1 cut(s) 307
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 33, 95
MfeI CAATTG 2 cut(s) 147, 182
MlsI TGGCCA 2 cut(s) 85, 168
MluCI AATT 5 cut(s) 138, 147, 156, 182, 198
MluNI TGGCCA 2 cut(s) 85, 168
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 2 cut(s) 117, 340
Mox20I TGGCCA 2 cut(s) 85, 168
MscI TGGCCA 2 cut(s) 85, 168
Msp20I TGGCCA 2 cut(s) 85, 168
MspI CCGG 1 cut(s) 267
MunI CAATTG 2 cut(s) 147, 182
MwoI GCNNNNNNNGC 2 cut(s) 227, 230
NcoI CCATGG 1 cut(s) 169
NdeII GATC 1 cut(s) 121
NlaIII CATG 3 cut(s) 173, 347, 361
NlaIV GGNNCC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 3 cut(s) 223, 232, 235
PspN4I GGNNCC 1 cut(s) 190
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 3 cut(s) 222, 231, 234
Sau3AI GATC 1 cut(s) 121
SetI ASST 2 cut(s) 12, 166
SfaNI GCATC 2 cut(s) 25, 88
Sse9I AATT 5 cut(s) 138, 147, 156, 182, 198
SsiI CCGC 1 cut(s) 307
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 57
TasI AATT 5 cut(s) 138, 147, 156, 182, 198
TfiI GAWTC 1 cut(s) 207
TscAI CASTG 1 cut(s) 62
TseI GCWGC 3 cut(s) 221, 230, 233
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 81
XapI RAATTY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.