Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000945.1

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Reverse (-)

200041 .. 202331

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000945.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggtcgatggcattgacctctgcactatagtacttcatgatgtgaggtcaagatttggaataatacctcaagaccctactctctttaatggcactgtcagatacaatttggaccgcttatctcaacattcagaccaggaaatatgggacccgagatttatcttgtgcatttcgaagattcttgggaagtgtcagcttcgagaggctgttgaggagaaagaaaaaggcttagacttgttagcctctaccacaaaaccaaggctgccgccgtcaagagcaacgccaccgggctcaacttggccgttatatcggccggcgagggggatacggagaggggacgcgggagaggtagaggtcggcgatgagggggaggaagcggaggacgaggagctagaggtcaggattggaggactgggaggtgtcgtagagccagaggcagaggcgggccttgaggagctgcttggctttcttggcctgcatgcgcttccccctgccacttggatacgccgccggggaaggttctgggcacgcagcccattcgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

181

Amino Acids

20.15

Weight (kDa)

5.1

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	341
AciI	CCGC	6 cut(s)	115, 266, 341, 377, 443, 508
AcoI	YGGCCR	2 cut(s)	299, 311
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	196, 391, 457
AluI	AGCT	3 cut(s)	196, 391, 457
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	4 cut(s)	299, 311, 445, 472
ApeKI	GCWGC	3 cut(s)	262, 457, 531
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	3 cut(s)	112, 148, 445
AsuC2I	CCSGG	2 cut(s)	288, 512
AsuII	TTCGAA	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	112, 148
BaeGI	GKGCMC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	249, 444
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	2 cut(s)	253, 286
BcgI	CGANNNNNNTGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	2 cut(s)	318, 495
BcnI	CCSGG	2 cut(s)	288, 512
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	27
BfuI	GTATCC	2 cut(s)	318, 495
BisI	GCNGC	5 cut(s)	263, 266, 458, 508, 532
BlsI	GCNGC	5 cut(s)	264, 267, 459, 509, 533
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	137, 288, 512
Bme18I	GGWCC	2 cut(s)	112, 148
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	112, 148, 445
BmiI	GGNNCC	2 cut(s)	149, 150
BmrFI	CCNGG	3 cut(s)	137, 288, 512
BmrI	ACTGGG	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	54, 470
BpuMI	CCSGG	2 cut(s)	288, 512
BsaJI	CCNNGG	2 cut(s)	257, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	257, 511
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	3 cut(s)	227, 401, 467
BseSI	GKGCMC	1 cut(s)	529
BseX3I	CGGCCG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	249, 444
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	314
BshFI	GGCC	4 cut(s)	301, 313, 447, 474
BsiEI	CGRYCG	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	287, 314, 511
BslFI	GGGAC	2 cut(s)	161, 350
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	2 cut(s)	161, 350
BsnI	GGCC	4 cut(s)	301, 313, 447, 474
BsoBI	CYCGRG	1 cut(s)	151
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	293, 529
BspACI	CCGC	6 cut(s)	115, 266, 341, 377, 443, 508
BspANI	GGCC	4 cut(s)	301, 313, 447, 474
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	149, 150
BspT104I	TTCGAA	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	257, 511
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	5 cut(s)	315, 445, 476, 480, 529
BstDEI	CTNAG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	484
BstMCI	CGRYCG	1 cut(s)	314
BstMWI	GCNNNNNNNGC	1 cut(s)	471
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	135, 286, 510
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	529
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	249, 444
BstZI	CGGCCG	1 cut(s)	311
BsuI	GTATCC	2 cut(s)	318, 495
BsuRI	GGCC	4 cut(s)	301, 313, 447, 474
BtgZI	GCGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	5 cut(s)	315, 445, 476, 480, 529
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	112, 148, 445
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	38, 479, 543
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	229
EaeI	YGGCCR	2 cut(s)	299, 311
EagI	CGGCCG	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	112, 148
Eco52I	CGGCCG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	3 cut(s)	41, 482, 546
FaiI	YATR	6 cut(s)	29, 39, 145, 307, 480, 544
FaqI	GGGAC	2 cut(s)	161, 350
FatI	CATG	3 cut(s)	37, 478, 542
FauI	CCCGC	2 cut(s)	334, 436
Fnu4HI	GCNGC	5 cut(s)	263, 266, 458, 508, 532
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	5 cut(s)	263, 266, 458, 508, 532
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	5 cut(s)	263, 266, 458, 508, 532
HaeIII	GGCC	4 cut(s)	301, 313, 447, 474
HapII	CCGG	3 cut(s)	287, 314, 511
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	41, 482, 546
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	287, 314, 511
Hpy188I	TCNGA	2 cut(s)	101, 133
Hpy188III	TCNNGA	6 cut(s)	38, 51, 71, 200, 273, 400
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	24, 168, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	471
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	41, 482, 546
HspAI	GCGC	1 cut(s)	482
KflI	GGGWCCC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	388, 454
Lsp1109I	GCAGC	2 cut(s)	249, 444
MaeI	CTAG	1 cut(s)	392
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	293, 529
MluCI	AATT	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	313
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	541
MspI	CCGG	3 cut(s)	287, 314, 511
MspR9I	CCNGG	3 cut(s)	137, 288, 512
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	471
NaeI	GCCGGC	1 cut(s)	315
NciI	CCSGG	2 cut(s)	288, 512
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	41, 482, 546
NlaIV	GGNNCC	2 cut(s)	149, 150
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	5 cut(s)	264, 267, 459, 509, 533
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	149, 150
PspPI	GGNCC	3 cut(s)	112, 148, 445
PspPPI	RGGWCCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	5 cut(s)	263, 266, 458, 508, 532
Sau96I	GGNCC	3 cut(s)	112, 148, 445
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	3 cut(s)	137, 288, 512
SduI	GDGCHC	2 cut(s)	293, 529
SfcI	CTRYAG	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	2 cut(s)	112, 148
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	2 cut(s)	69, 449
SmoI	CTYRAG	2 cut(s)	69, 449
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	6 cut(s)	115, 266, 341, 377, 443, 508
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	135, 286, 510
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	6, 173, 199
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	2 cut(s)	268, 510
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	3 cut(s)	262, 457, 531
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	112, 148
XceI	RCATGY	1 cut(s)	482
XspI	CTAG	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.