Rh4CG141200

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009736
Physical Location & Seq
Forward (+)
28014786 .. 28024227
9442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG141200.1

Sequence Viewer

Length: 588 bp
ATGGGTTCTGCTTCTCTGATCAATCCGCTGACATCGTCCCTCTGCGCCCCCAAGTCAGAGCTCACTACACCCAAACACCTGTGGGTGGTAGGCCCCACCTCCACGTCGCTGAGTCTGAGGTCGAGCCAGAGCAAGAGAGGAGGGTCTGTTGTGTGCAAGGCCGTGTCCGTGAAGCCGGAGACCGCAGTGGAGGGTCTCAACATTGCCGAAGATGTTACTCAGATCATTGGTGTAGAGCCGACGGAAAGCAACATCCTTTCAGGTGGAAAACCTGGTCCCCACAAAATTCAAGGGATTGGAGCTGGATTTATACCTAGAAATTTGCACCAGGATGTCGTTGATGAAATTATAGAGATCTCAAGTGATGAAGCTGTTGAAATGGCAAAGCAATTAGCACTTCAGGAAGGCTTGTTGGTTGGCATTTCTTCAGGAGCAGCAGCAGCTGCTGCTCTGAAGGTTGGTAAGAGGCCTGAAAATGCAGGGAAGCTTATCACGGTGGTCTTTCCAAGCTTTGGGGAGCGATATCTCTCCACTGTTCTTTTCCAGTCAATTAGAGAAGAATGTGAGAAGATGCAACCCGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0097159 GO:0097708 GO:0098791 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

195

Amino Acids

20.46

Weight (kDa)

5.68

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 70 - 167 1.4e-14 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 512
AciI CCGC 2 cut(s) 26, 183
AcsI RAATTY 2 cut(s) 285, 319
AcuI CTGAAG 3 cut(s) 383, 411, 473
AfiI CCNNNNNNNGG 2 cut(s) 85, 512
AgsI TTSAA 2 cut(s) 290, 377
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 271, 327
AluBI AGCT 6 cut(s) 61, 302, 371, 443, 487, 510
AluI AGCT 6 cut(s) 61, 302, 371, 443, 487, 510
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 173, 200
AlwNI CAGNNNCTG 2 cut(s) 443, 446
AoxI GGCC 3 cut(s) 91, 159, 467
ApeKI GCWGC 5 cut(s) 434, 437, 440, 443, 446
ApoI RAATTY 2 cut(s) 285, 319
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 92, 275
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 5 cut(s) 430, 433, 446, 449, 452
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 2 cut(s) 273, 329
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 173, 200
BfaI CTAG 1 cut(s) 315
BglII AGATCT 1 cut(s) 354
BisI GCNGC 5 cut(s) 435, 438, 441, 444, 447
BlsI GCNGC 5 cut(s) 436, 439, 442, 445, 448
Bme1390I CCNGG 2 cut(s) 273, 329
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 92, 275
BmiI GGNNCC 2 cut(s) 94, 277
BmrFI CCNGG 2 cut(s) 273, 329
BmsI GCATC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 343
BsaI GGTCTC 2 cut(s) 173, 200
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 512
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 273, 329
BseGI GGATG 2 cut(s) 252, 337
BseLI CCNNNNNNNGG 2 cut(s) 85, 512
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 3 cut(s) 101, 107, 233
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 5 cut(s) 430, 433, 446, 449, 452
BshFI GGCC 3 cut(s) 93, 161, 469
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 22, 261
BslI CCNNNNNNNGG 2 cut(s) 85, 512
BsmAI GTCTC 2 cut(s) 173, 200
BsmFI GGGAC 2 cut(s) 22, 261
BsnI GGCC 3 cut(s) 93, 161, 469
Bso31I GGTCTC 2 cut(s) 173, 200
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 18, 222, 354
BspACI CCGC 2 cut(s) 26, 183
BspANI GGCC 3 cut(s) 93, 161, 469
BspCNI CTCAG 3 cut(s) 102, 108, 232
BspLI GGNNCC 2 cut(s) 94, 277
BspTNI GGTCTC 2 cut(s) 173, 200
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 1 cut(s) 544
BssMI GATC 3 cut(s) 18, 222, 354
Bst2UI CCWGG 2 cut(s) 273, 329
Bst4CI ACNGT 2 cut(s) 496, 535
BstAPI GCANNNNNTGC 2 cut(s) 443, 446
BstDEI CTNAG 3 cut(s) 110, 116, 219
BstF5I GGATG 2 cut(s) 252, 337
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 21, 225, 357
BstMAI GTCTC 2 cut(s) 173, 200
BstMBI GATC 3 cut(s) 18, 222, 354
BstMWI GCNNNNNNNGC 3 cut(s) 440, 443, 446
BstNI CCWGG 2 cut(s) 273, 329
BstSCI CCNGG 2 cut(s) 271, 327
BstV1I GCAGC 5 cut(s) 430, 433, 446, 449, 452
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 3 cut(s) 93, 161, 469
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 252, 337
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 531
CaiI CAGNNNCTG 2 cut(s) 443, 446
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 92, 275
CsiI ACCWGGT 1 cut(s) 271
CviAII CATG 1 cut(s) 585
DdeI CTNAG 3 cut(s) 110, 116, 219
DpnI GATC 3 cut(s) 20, 224, 356
DpnII GATC 3 cut(s) 18, 222, 354
Ecl136II GAGCTC 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 2 cut(s) 173, 200
Eco32I GATATC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 3 cut(s) 383, 411, 473
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 271, 327
EcoRV GATATC 1 cut(s) 524
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 1 cut(s) 588
FaiI YATR 3 cut(s) 311, 350, 586
FaqI GGGAC 2 cut(s) 22, 261
FatI CATG 1 cut(s) 584
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 5 cut(s) 435, 438, 441, 444, 447
FokI GGATG 2 cut(s) 239, 344
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 5 cut(s) 435, 438, 441, 444, 447
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 46
GluI GCNGC 5 cut(s) 435, 438, 441, 444, 447
HaeIII GGCC 3 cut(s) 93, 161, 469
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 588
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HindIII AAGCTT 2 cut(s) 485, 508
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 176
Hpy188I TCNGA 5 cut(s) 18, 58, 117, 222, 453
Hpy188III TCNNGA 2 cut(s) 401, 429
Hpy99I CGWCG 2 cut(s) 109, 244
HpyAV CCTTC 2 cut(s) 398, 448
HpyCH4III ACNGT 2 cut(s) 496, 535
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 156, 325, 479, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 443, 446
HpyF3I CTNAG 3 cut(s) 110, 116, 219
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 588
HspAI GCGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 222, 354
LmnI GCTCC 3 cut(s) 299, 431, 517
Lsp1109I GCAGC 5 cut(s) 430, 433, 446, 449, 452
LweI GCATC 1 cut(s) 561
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 20, 224, 356
MboI GATC 3 cut(s) 18, 222, 354
MboII GAAGA 4 cut(s) 221, 417, 569, 580
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 5 cut(s) 285, 319, 345, 389, 549
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 7 cut(s) 50, 109, 111, 131, 134, 184, 459
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 28, 443
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 273, 329
MvaI CCWGG 2 cut(s) 273, 329
MwoI GCNNNNNNNGC 3 cut(s) 440, 443, 446
NdeII GATC 3 cut(s) 18, 222, 354
NlaIII CATG 1 cut(s) 588
NlaIV GGNNCC 2 cut(s) 94, 277
PceI AGGCCT 1 cut(s) 469
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 5 cut(s) 436, 439, 442, 445, 448
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 271, 327
PspGI CCWGG 2 cut(s) 271, 327
PspN4I GGNNCC 2 cut(s) 94, 277
PspPI GGNCC 2 cut(s) 92, 275
PstNI CAGNNNCTG 2 cut(s) 443, 446
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 330
SacI GAGCTC 1 cut(s) 63
SatI GCNGC 5 cut(s) 435, 438, 441, 444, 447
Sau3AI GATC 3 cut(s) 18, 222, 354
Sau96I GGNCC 2 cut(s) 92, 275
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 273, 329
SduI GDGCHC 1 cut(s) 63
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 1 cut(s) 561
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 5 cut(s) 285, 319, 345, 389, 549
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 2 cut(s) 26, 183
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 63
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 271, 327
TaaI ACNGT 2 cut(s) 496, 535
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 122
TasI AATT 5 cut(s) 285, 319, 345, 389, 549
TscAI CASTG 2 cut(s) 192, 538
TseI GCWGC 5 cut(s) 434, 437, 440, 443, 446
TspDTI ATGAA 2 cut(s) 357, 381
TspGWI ACGGA 2 cut(s) 157, 257
TspRI CASTG 2 cut(s) 192, 538
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 285, 319
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.