Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

2845345 .. 2845921

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG042500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCAGTATCCGGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCTGAAAATGCTGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGCACTATTTGATACCATTAGGCATGAGGCAGAAAACATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

77

Amino Acids

8.14

Weight (kDa)

5.74

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	2 - 53	1.1e-08	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	86, 95, 98
AsuHPI	GGTGA	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	73, 107, 110
BciVI	GTATCC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	19
BisI	GCNGC	3 cut(s)	87, 96, 99
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	3 cut(s)	88, 97, 100
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	73, 107, 110
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 95
BstV1I	GCAGC	3 cut(s)	73, 107, 110
BsuI	GTATCC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	121
CviAII	CATG	2 cut(s)	209, 223
CviJI	RGCY	2 cut(s)	40, 121
CviKI_1	RGCY	2 cut(s)	40, 121
DdeI	CTNAG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	121
FaeI	CATG	2 cut(s)	212, 226
FaiI	YATR	2 cut(s)	210, 224
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	2 cut(s)	208, 222
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	87, 96, 99
Fsp4HI	GCNGC	3 cut(s)	87, 96, 99
GluI	GCNGC	3 cut(s)	87, 96, 99
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	212, 226
HinfI	GANTC	2 cut(s)	20, 72
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	89, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 95
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	212, 226
LpnPI	CCDG	5 cut(s)	25, 66, 117, 135, 172
Lsp1109I	GCAGC	3 cut(s)	73, 107, 110
MbiI	CCGCTC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	10, 205
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	92, 95
NlaIII	CATG	2 cut(s)	212, 226
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	20, 72
PkrI	GCNGC	3 cut(s)	88, 97, 100
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	87, 96, 99
SetI	ASST	2 cut(s)	42, 61
SgeI	CNNG	8 cut(s)	24, 56, 93, 134, 144, 163, 171, 221
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	172
StuI	AGGCCT	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	20, 72
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	3 cut(s)	86, 95, 98
XmiI	GTMKAC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.