Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

35896426 .. 35897188

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013687

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTGGACGTCACTCTCTTCAGCCTCGACAGCGACAAGAACATCTTCCGCCACCACAGGCGCATCTTTTACTACCTCACCCGCCATCGCTTCTCATTGGAGGGGAACGCGGGAGAGGTAGAGGCCGGCGATGAGGGGGAGGAAGCAGAGGACGAGGAGCTGGAGGTCGGGATCGGAGGATTGGAAGGTGTCGTAGAGCCAGAGGCAGAGGTTGTTGTCGCCGTCGCAGAGCCGGGTTGTTGGAGGAGGATGGAGAAGATTTGGGAGGATGTGTGGGGGTTGTGGAGGAGGGAACGGGCGGTTGTATGGGTGGTGGAGGAGAGGGAGGGGAGGATGGAGGAGAGGGATTGGATTGCTTCTGCTTGGGGTTTGGAGGAGGTTGAGGATGAGGAGTCTAATGAGGTTGAGGGTTTGGTGGTGGAGGTTAGGGCGGTCGAACTAGTGGTGCCTTCTGGGATGGTGGTGGTTATTCTGATGGTATCATCTATGGTTGCCGTGGTGGTGTCTCCGGCAATGGATGAGGTGGTGGTGGAGGGATCGTTAGACATTGAACTACTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.2

Weight (kDa)

4.27

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	445
AccII	CGCG	1 cut(s)	110
AciI	CCGC	5 cut(s)	49, 82, 110, 299, 431
AclWI	GGATC	2 cut(s)	179, 544
AcuI	CTGAAG	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	551
AhlI	ACTAGT	1 cut(s)	439
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	2 cut(s)	179, 544
AoxI	GGCC	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	445
BccI	CCATC	5 cut(s)	93, 244, 328, 451, 469
BceAI	ACGGC	2 cut(s)	206, 479
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	510
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 524, 554
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	6 cut(s)	255, 274, 339, 391, 462, 523
BseMI	GCAATG	1 cut(s)	519
BseRI	GAGGAG	7 cut(s)	170, 259, 301, 332, 353, 389, 404
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	445
BsiEI	CGRYCG	1 cut(s)	435
BsiSI	CCGG	3 cut(s)	126, 233, 509
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	171, 536
BspACI	CCGC	5 cut(s)	49, 82, 110, 299, 431
BspANI	GGCC	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	2 cut(s)	179, 544
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	171, 536
BssNI	GRCGYC	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	557
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	6 cut(s)	255, 274, 339, 391, 462, 523
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	174, 539
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	2 cut(s)	171, 536
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	495
BtgZI	GCGATG	2 cut(s)	71, 144
BtsCI	GGATG	6 cut(s)	255, 274, 339, 391, 462, 523
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	125
CviJI	RGCY	5 cut(s)	24, 125, 160, 199, 232
CviKI_1	RGCY	5 cut(s)	24, 125, 160, 199, 232
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	2 cut(s)	173, 538
DpnII	GATC	2 cut(s)	171, 536
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	4
FaiI	YATR	2 cut(s)	307, 488
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FauI	CCCGC	2 cut(s)	89, 103
FokI	GGATG	6 cut(s)	262, 281, 346, 398, 469, 530
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	3 cut(s)	126, 233, 509
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	126, 233, 509
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	176, 474
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	179, 459
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	557
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	171, 536
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	43, 139, 146, 213, 246, 438, 522, 544
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	173, 538
MboI	GATC	2 cut(s)	171, 536
MboII	GAAGA	3 cut(s)	10, 37, 268
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	3 cut(s)	126, 233, 509
MspR9I	CCNGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	30
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	171, 536
NgoMIV	GCCGGC	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	447
Sau3AI	GATC	2 cut(s)	171, 536
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	439
SsiI	CCGC	5 cut(s)	49, 82, 110, 299, 431
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	27, 435
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.