RLG00000027500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009736
Physical Location & Seq
Forward (+)
12232521 .. 12233001
481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027500

Sequence Viewer

Length: 375 bp
ATGGTGGACGTCACCGATCTATTCAGCCTCAGCAGCGACACGAACATCTTCTGCCACCACGGGCTCATCTTTTACGACCTCACCCGCCGTCGCTTCTCGCTGGAGGTTCCAAGAATGGCCGCCACGGGAGGTGGTCTCGTGAGTGTAAAGGGCCAAGTGGACGGCCTCGAAGCCAGCGATTTGCAAGCAGAGCGGGACGCGGGAGAGGTAGAGGCCGGCGATGAGGGGGAGGAAGCAAAGGACGAGAAGCTGGAGGTCAGGATCATAGGATTGGAAGGTGCCGTAGAGCCAGAGGCAGATGTTGTTGTCACCGGCGCGGAGCCGGGTTGTTTGAGGAGGAGGGAGGAGATTTGGGAGGATGTGTGGGGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.55

Weight (kDa)

4.3

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 2 cut(s) 200, 317
AciI CCGC 5 cut(s) 85, 120, 193, 200, 317
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 9
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 269
AoxI GGCC 4 cut(s) 117, 151, 163, 213
ApeKI GCWGC 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 4, 73, 301
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 45
BceAI ACGGC 3 cut(s) 72, 178, 266
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 2 cut(s) 34, 120
BlsI GCNGC 2 cut(s) 35, 121
Bme1390I CCNGG 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 108, 280, 321
BmrFI CCNGG 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 2 cut(s) 122, 272
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 58, 123
BsaXI ACNNNNNCTCC 1 cut(s) 347
Bse118I RCCGGY 2 cut(s) 215, 311
BseDI CCNNGG 2 cut(s) 58, 123
BseGI GGATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 43
BseRI GAGGAG 3 cut(s) 349, 352, 359
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 200, 317
BshFI GGCC 4 cut(s) 119, 153, 165, 215
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 3 cut(s) 216, 312, 323
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 4 cut(s) 119, 153, 165, 215
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 16, 261
BspACI CCGC 5 cut(s) 85, 120, 193, 200, 317
BspANI GGCC 4 cut(s) 119, 153, 165, 215
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 2 cut(s) 200, 317
BspLI GGNNCC 3 cut(s) 108, 280, 321
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 193
BsrFI RCCGGY 2 cut(s) 215, 311
BssAI RCCGGY 2 cut(s) 215, 311
BssECI CCNNGG 2 cut(s) 58, 123
BssMI GATC 2 cut(s) 16, 261
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 175, 186, 217
BstDEI CTNAG 1 cut(s) 29
BstDSI CCRYGG 2 cut(s) 58, 123
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 2 cut(s) 200, 317
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 2 cut(s) 19, 264
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 16, 261
BstMWI GCNNNNNNNGC 2 cut(s) 33, 190
BstSCI CCNGG 1 cut(s) 322
BstUI CGCG 2 cut(s) 200, 317
BstV1I GCAGC 1 cut(s) 45
BsuRI GGCC 4 cut(s) 119, 153, 165, 215
BtgI CCRYGG 2 cut(s) 58, 123
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 175, 186, 217
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 2 cut(s) 215, 311
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 29
DpnI GATC 2 cut(s) 18, 263
DpnII GATC 2 cut(s) 16, 261
EaeI YGGCCR 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 1 cut(s) 266
FaqI GGGAC 1 cut(s) 209
FauI CCCGC 3 cut(s) 92, 186, 193
Fnu4HI GCNGC 2 cut(s) 34, 120
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 34, 120
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 34, 120
GsuI CTGGAG 2 cut(s) 122, 272
HaeIII GGCC 4 cut(s) 119, 153, 165, 215
HapII CCGG 3 cut(s) 216, 312, 323
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HpaII CCGG 3 cut(s) 216, 312, 323
HphI GGTGA 3 cut(s) 4, 73, 301
Hpy166II GTNNAC 2 cut(s) 7, 160
Hpy188III TCNNGA 2 cut(s) 139, 259
Hpy8I GTNNAC 2 cut(s) 7, 160
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 190
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 16, 261
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 86, 187, 229, 236, 244, 303, 325, 336
Lsp1109I GCAGC 1 cut(s) 45
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 10, 307
MalI GATC 2 cut(s) 18, 263
MbiI CCGCTC 1 cut(s) 193
MboI GATC 2 cut(s) 16, 261
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 66
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 47
MspI CCGG 3 cut(s) 216, 312, 323
MspR9I CCNGG 1 cut(s) 324
MvnI CGCG 2 cut(s) 200, 317
MwoI GCNNNNNNNGC 2 cut(s) 33, 190
NaeI GCCGGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 324
NdeII GATC 2 cut(s) 16, 261
NgoMIV GCCGGC 1 cut(s) 215
NlaIV GGNNCC 3 cut(s) 108, 280, 321
NmuCI GTSAC 2 cut(s) 10, 307
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 35, 121
PspN4I GGNNCC 3 cut(s) 108, 280, 321
PspPI GGNCC 1 cut(s) 151
SatI GCNGC 2 cut(s) 34, 120
Sau3AI GATC 2 cut(s) 16, 261
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 66
SetI ASST 8 cut(s) 12, 81, 108, 133, 210, 252, 258, 280
SgrAI CRCCGGYG 1 cut(s) 311
SsiI CCGC 5 cut(s) 85, 120, 193, 200, 317
StyD4I CCNGG 1 cut(s) 322
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 168
TauI GCSGC 1 cut(s) 122
TseFI GTSAC 2 cut(s) 10, 307
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 2 cut(s) 10, 307
XmnI GAANNNNTTC 1 cut(s) 47
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.