Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

29049010 .. 29058252

Gene Structure 9243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGTTCTGCTGCTCTGATCAATCCGCTGACATCGTCTCTCTGCGCCCCCAAGTCAGAGCTCACTACACCCAAACACCTGTGGGTGGTAGGCCCCACCTCCACGTCGCTGAGTCTGAGGTCCAGCCAGAGCAAGAGAGGAGGGTCTGTTGTGTGCAAGGCCGTGTCCGTGAAGCCGGAGACCGCAGTGGAGGGTCTCAACATTGCCGAAGATGTTACTCAGCTTATTGGGAAAACACCGATGGTGTACCTGAATAATATTATAAAGGGGTCTGTTGCGAACATTGCTGCAAAGCTTGAAATTATGGAGCCATGTTGCAGTGTCAAGGACAGGATAGGATACAGTATGATAACTGATGCTGAGCAAAGAGGACTTATAAAGCCTGGACAGATCTCAAGTGATGAAGCTGTTGAAATGGCAAAGCAATTAGCACTTCAGGAAGGCTTGTTGGTTGGCATTTCTTCAGGAGCAGCAGCAGCTGCTGCTCTGAAGGTTGGTAAGAGGCCTGAAAATGCAGGGAAGCTTATCACGGTGGTCTTTCCAAGCTTTGGGGAGCGATATCTCTCCACTGTTCTTTTCCAGTCAATTAGAGAAGAATGTGAGAAGATGCAACCCGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0097159 GO:0097708 GO:0098791 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

207

Amino Acids

21.89

Weight (kDa)

8.25

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	72 - 123	1.2e-07	Pyridoxal-phosphate dependent enzyme
PALP	PF00291	130 - 179	4.3e-06	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	263, 377
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	2 cut(s)	26, 183
AcuI	CTGAAG	3 cut(s)	419, 447, 509
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	85, 548
AgsI	TTSAA	2 cut(s)	299, 413
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	7 cut(s)	61, 223, 295, 407, 479, 523, 546
AluI	AGCT	7 cut(s)	61, 223, 295, 407, 479, 523, 546
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	42, 173, 200
AlwNI	CAGNNNCTG	2 cut(s)	479, 482
AoxI	GGCC	3 cut(s)	91, 159, 503
ApeKI	GCWGC	7 cut(s)	11, 287, 470, 473, 476, 479, 482
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	92, 120
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	274, 466, 469, 482, 485, 488
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	42, 173, 200
BfuI	GTATCC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	7 cut(s)	12, 288, 471, 474, 477, 480, 483
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	7 cut(s)	13, 289, 472, 475, 478, 481, 484
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	92, 120
BmiI	GGNNCC	2 cut(s)	94, 309
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	346, 597
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	379
BsaI	GGTCTC	2 cut(s)	173, 200
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 548
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	2 cut(s)	201, 282
BseBI	CCWGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	85, 548
BseMI	GCAATG	2 cut(s)	201, 282
BseMII	CTCAG	4 cut(s)	101, 107, 233, 351
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	6 cut(s)	274, 466, 469, 482, 485, 488
BshFI	GGCC	3 cut(s)	93, 161, 505
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	85, 548
BsmAI	GTCTC	3 cut(s)	42, 173, 200
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	93, 161, 505
Bso31I	GGTCTC	2 cut(s)	173, 200
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	18, 390
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	2 cut(s)	26, 183
BspANI	GGCC	3 cut(s)	93, 161, 505
BspCNI	CTCAG	4 cut(s)	102, 108, 232, 352
BspLI	GGNNCC	2 cut(s)	94, 309
BspTNI	GGTCTC	2 cut(s)	173, 200
BsrDI	GCAATG	2 cut(s)	201, 282
BsrI	ACTGG	1 cut(s)	580
BssMI	GATC	2 cut(s)	18, 390
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	344, 532, 571
BstAPI	GCANNNNNTGC	2 cut(s)	479, 482
BstDEI	CTNAG	4 cut(s)	110, 116, 219, 360
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	21, 393
BstMAI	GTCTC	3 cut(s)	42, 173, 200
BstMBI	GATC	2 cut(s)	18, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 476, 479, 482
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	6 cut(s)	274, 466, 469, 482, 485, 488
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	93, 161, 505
BtrI	CACGTC	1 cut(s)	105
BtsI	GCAGTG	2 cut(s)	192, 325
BtsIMutI	CAGTG	3 cut(s)	192, 325, 567
CaiI	CAGNNNCTG	2 cut(s)	479, 482
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	92, 120
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	312, 621
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	4 cut(s)	110, 116, 219, 360
DpnI	GATC	2 cut(s)	20, 392
DpnII	GATC	2 cut(s)	18, 390
Ecl136II	GAGCTC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	2 cut(s)	173, 200
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	3 cut(s)	419, 447, 509
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	2 cut(s)	315, 624
FaiI	YATR	6 cut(s)	263, 305, 313, 347, 377, 622
FatI	CATG	2 cut(s)	311, 620
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	7 cut(s)	12, 288, 471, 474, 477, 480, 483
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	7 cut(s)	12, 288, 471, 474, 477, 480, 483
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	7 cut(s)	12, 288, 471, 474, 477, 480, 483
HaeIII	GGCC	3 cut(s)	93, 161, 505
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	315, 624
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	3 cut(s)	293, 521, 544
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	18, 58, 117, 489
Hpy188III	TCNNGA	2 cut(s)	437, 465
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	434, 484
HpyCH4III	ACNGT	3 cut(s)	344, 532, 571
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	5 cut(s)	156, 290, 318, 515, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 476, 479, 482
HpyF3I	CTNAG	4 cut(s)	110, 116, 219, 360
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	315, 624
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 390
LmnI	GCTCC	3 cut(s)	307, 467, 553
Lsp1109I	GCAGC	6 cut(s)	274, 466, 469, 482, 485, 488
LweI	GCATC	2 cut(s)	346, 597
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	20, 392
MboI	GATC	2 cut(s)	18, 390
MboII	GAAGA	4 cut(s)	221, 453, 605, 616
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	3 cut(s)	300, 425, 585
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	7 cut(s)	109, 111, 131, 134, 184, 362, 495
MspA1I	CMGCKG	2 cut(s)	28, 479
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	284, 476, 479, 482
NdeII	GATC	2 cut(s)	18, 390
NlaIII	CATG	2 cut(s)	315, 624
NlaIV	GGNNCC	2 cut(s)	94, 309
PceI	AGGCCT	1 cut(s)	505
PflFI	GACNNNGTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	7 cut(s)	13, 289, 472, 475, 478, 481, 484
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PsiI	TTATAA	2 cut(s)	263, 377
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	94, 309
PspPI	GGNCC	2 cut(s)	92, 120
PstNI	CAGNNNCTG	2 cut(s)	479, 482
PsuI	RGATCY	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	7 cut(s)	12, 288, 471, 474, 477, 480, 483
Sau3AI	GATC	2 cut(s)	18, 390
Sau96I	GGNCC	2 cut(s)	92, 120
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	2 cut(s)	346, 597
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	3 cut(s)	300, 425, 585
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	2 cut(s)	26, 183
SspI	AATATT	1 cut(s)	259
SstI	GAGCTC	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	344, 532, 571
TaiI	ACGT	1 cut(s)	107
TasI	AATT	3 cut(s)	300, 425, 585
TscAI	CASTG	3 cut(s)	192, 325, 574
TseI	GCWGC	7 cut(s)	11, 287, 470, 473, 476, 479, 482
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	3 cut(s)	192, 325, 574
Tth111I	GACNNNGTC	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.