Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Reverse (-)

2817510 .. 2829582

Gene Structure 12073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGTATCCAGTGAGGAAGCAATTGAAACTGCTAAGCTGCTTGCGCTAAAAGAAGGTCTTTTGGTGGGGATTTCATCAGGTGCTGCAGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAATTAATAGTTGTTGTGTTTGCCAGTTCTGGAGAGCGTTATCTGTCTTCTCCACTCTTCGATACCATTAGGCACGAGGCAGAAAATATGAAGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

77

Amino Acids

8.15

Weight (kDa)

5.82

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	2 - 51	3.7e-09	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	26, 230
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	83
ApeKI	GCWGC	6 cut(s)	37, 83, 86, 89, 92, 95
AseI	ATTAAT	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	6 cut(s)	24, 70, 98, 101, 104, 107
BciVI	GTATCC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	6 cut(s)	38, 84, 87, 90, 93, 96
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	6 cut(s)	39, 85, 88, 91, 94, 97
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	9, 156
BseNI	ACTGG	2 cut(s)	9, 156
BseXI	GCAGC	6 cut(s)	24, 70, 98, 101, 104, 107
Bsp1720I	GCTNAGC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	9, 156
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 89, 92, 95
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	6 cut(s)	24, 70, 98, 101, 104, 107
BstV2I	GAAGAC	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	46
CviJI	RGCY	1 cut(s)	37
CviKI_1	RGCY	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
FaiI	YATR	1 cut(s)	221
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
Fnu4HI	GCNGC	6 cut(s)	38, 84, 87, 90, 93, 96
Fsp4HI	GCNGC	6 cut(s)	38, 84, 87, 90, 93, 96
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	6 cut(s)	38, 84, 87, 90, 93, 96
GsuI	CTGGAG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 89, 92, 95
HpyF3I	CTNAG	1 cut(s)	33
HspAI	GCGC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	22, 63, 114, 147, 169
Lsp1109I	GCAGC	6 cut(s)	24, 70, 98, 101, 104, 107
MboII	GAAGA	2 cut(s)	171, 181
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	2 cut(s)	21, 134
MnlI	CCTC	2 cut(s)	7, 202
MseI	TTAA	1 cut(s)	137
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	43, 89, 92, 95
PkrI	GCNGC	6 cut(s)	39, 85, 88, 91, 94, 97
PshBI	ATTAAT	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	6 cut(s)	38, 84, 87, 90, 93, 96
SetI	ASST	3 cut(s)	39, 58, 82
SfcI	CTRYAG	1 cut(s)	84
SgeI	CNNG	9 cut(s)	21, 53, 90, 131, 141, 168, 174, 218, 220
Sse9I	AATT	2 cut(s)	21, 134
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	21, 134
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	6 cut(s)	37, 83, 86, 89, 92, 95
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.