Rh4AG201600

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009736
Physical Location & Seq
Reverse (-)
48706297 .. 48709872
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG201600.1

Sequence Viewer

Length: 408 bp
ATGGCAGTGGAGAAGGCTGGTATAGCTAAAGATGTTACTGAACTGTATGGTGTGGAACCAGTTGAGAGTCCAGTCCTAACTGGAGGAAAGCCTGGTCCACACAAGATCCAAGGAATAGGTGCTGGTTTTGTCCCAGGTGTCTTGGAAGTCAATATCATTGATGAAGTCATTCAAATATCAAGTGATGAAGCAATTGAAACTGCCAAGCTTCTTGCAACAAAAGAAGGTTTGCTTGTGGGAATATCATCTGGTGCTGCTGCCGCTGCTGCAATTAGGATTGCAAAGAGACCAGAGAATGCTGGAAAGCTCATTGTTGTGGTTTTCCCAAGCTTTGGGGAGAGATATCTCTCCTCTGTGCTGTTTGAGTCAGTGAGACGGGAAGCTGAAAGCATGACCTTTGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

135

Amino Acids

14.12

Weight (kDa)

4.93

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 12 - 109 1.3e-16 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AciI CCGC 1 cut(s) 261
AclWI GGATC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 173, 197
AjnI CCWGG 2 cut(s) 91, 133
AluBI AGCT 5 cut(s) 26, 208, 307, 330, 383
AluI AGCT 5 cut(s) 26, 208, 307, 330, 383
Alw26I GTCTC 3 cut(s) 280, 367, 395
AlwI GGATC 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 254, 257, 263, 266
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BbvI GCAGC 4 cut(s) 241, 244, 250, 253
BciT130I CCWGG 2 cut(s) 93, 135
BcoDI GTCTC 3 cut(s) 280, 367, 395
BisI GCNGC 5 cut(s) 255, 258, 261, 264, 267
BlsI GCNGC 5 cut(s) 256, 259, 262, 265, 268
Bme1390I CCNGG 2 cut(s) 93, 135
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 93, 135
BpmI CTGGAG 1 cut(s) 102
BsaI GGTCTC 2 cut(s) 280, 395
BsaJI CCNNGG 2 cut(s) 109, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 3 cut(s) 59, 71, 85
BseBI CCWGG 2 cut(s) 93, 135
BseDI CCNNGG 2 cut(s) 109, 133
BseLI CCNNNNNNNGG 1 cut(s) 332
BseNI ACTGG 3 cut(s) 59, 71, 85
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 4 cut(s) 241, 244, 250, 253
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 3 cut(s) 280, 367, 395
BsmBI CGTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 301
Bso31I GGTCTC 2 cut(s) 280, 395
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 280, 395
BsrI ACTGG 3 cut(s) 59, 71, 85
BssECI CCNNGG 2 cut(s) 109, 133
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 93, 135
Bst4CI ACNGT 1 cut(s) 45
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 3 cut(s) 280, 367, 395
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 4 cut(s) 23, 260, 263, 266
BstNI CCWGG 2 cut(s) 93, 135
BstSCI CCNGG 2 cut(s) 91, 133
BstV1I GCAGC 4 cut(s) 241, 244, 250, 253
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 375
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 1 cut(s) 391
CviJI RGCY 7 cut(s) 17, 26, 91, 208, 307, 330, 383
CviKI_1 RGCY 7 cut(s) 17, 26, 91, 208, 307, 330, 383
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 2 cut(s) 280, 395
Eco32I GATATC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 91, 133
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 1 cut(s) 394
FaiI YATR 3 cut(s) 23, 48, 392
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 255, 258, 261, 264, 267
Fsp4HI GCNGC 5 cut(s) 255, 258, 261, 264, 267
GluI GCNGC 5 cut(s) 255, 258, 261, 264, 267
GsuI CTGGAG 1 cut(s) 102
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 206, 328
HinfI GANTC 2 cut(s) 67, 365
Hpy166II GTNNAC 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 7, 218
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 215, 269, 281
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 260, 263, 266
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 1 cut(s) 105
Lsp1109I GCAGC 4 cut(s) 241, 244, 250, 253
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 105
MluCI AATT 2 cut(s) 192, 270
MlyI GAGTC 2 cut(s) 76, 374
MnlI CCTC 2 cut(s) 77, 361
MroXI GAANNNNTTC 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 93, 135
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 2 cut(s) 93, 135
MwoI GCNNNNNNNGC 4 cut(s) 23, 260, 263, 266
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 57
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 5 cut(s) 256, 259, 262, 265, 268
PleI GAGTC 2 cut(s) 75, 373
PpsI GAGTC 2 cut(s) 75, 373
Psp6I CCWGG 2 cut(s) 91, 133
PspGI CCWGG 2 cut(s) 91, 133
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 5 cut(s) 255, 258, 261, 264, 267
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 76, 374
ScrFI CCNGG 2 cut(s) 93, 135
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 2 cut(s) 192, 270
SsiI CCGC 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 91, 133
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 45
TasI AATT 2 cut(s) 192, 270
TauI GCSGC 1 cut(s) 263
TscAI CASTG 2 cut(s) 12, 375
TseI GCWGC 4 cut(s) 254, 257, 263, 266
TspDTI ATGAA 2 cut(s) 177, 201
TspRI CASTG 2 cut(s) 12, 375
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.