Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

3260735 .. 3266382

Gene Structure 5648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCAGTATCTGGTGAGGAATCTATTGAGACTGCTAAGCTACTTACCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAACAGCGCGCAGCAGCAATAAAGTTGGCAAAAAAGCAAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTAGGAGAGCGTGTCTCCGTCGTGTACCAAAAAGCTGCCTAGTCACAAATGGGTTGACGGGGAAGGTTGCATCTGATACAAAGCAAGACGGCCAAGATATGCCAACTCATGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTAGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

167

Amino Acids

17.84

Weight (kDa)

9.54

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	91 - 143	1.8e-08	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	1 cut(s)	97
AciI	CCGC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	256
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	168, 434
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	3 cut(s)	40, 201, 310
AluI	AGCT	3 cut(s)	40, 201, 310
Alw26I	GTCTC	3 cut(s)	23, 185, 293
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	256, 389
ApeKI	GCWGC	7 cut(s)	86, 99, 102, 201, 356, 365, 368
AspLEI	GCGC	2 cut(s)	97, 99
AsuHPI	GGTGA	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BbvI	GCAGC	7 cut(s)	73, 111, 114, 188, 343, 377, 380
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	3 cut(s)	23, 185, 293
BfaI	CTAG	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	7 cut(s)	87, 100, 103, 202, 357, 366, 369
BlpI	GCTNAGC	2 cut(s)	36, 306
BlsI	GCNGC	7 cut(s)	88, 101, 104, 203, 358, 367, 370
BmrI	ACTGGG	2 cut(s)	157, 423
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	2 cut(s)	157, 423
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
Bpu1102I	GCTNAGC	2 cut(s)	36, 306
BsaBI	GATNNNNATC	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 434
Bse1I	ACTGG	3 cut(s)	163, 282, 429
Bse8I	GATNNNNATC	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	168, 434
BseNI	ACTGG	3 cut(s)	163, 282, 429
BsePI	GCGCGC	1 cut(s)	95
BseXI	GCAGC	7 cut(s)	73, 111, 114, 188, 343, 377, 380
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	258, 391
BsiSI	CCGG	2 cut(s)	136, 402
BslI	CCNNNNNNNGG	2 cut(s)	168, 434
BsmAI	GTCTC	3 cut(s)	23, 185, 293
BsnI	GGCC	2 cut(s)	258, 391
Bsp1720I	GCTNAGC	2 cut(s)	36, 306
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	2 cut(s)	258, 391
BspFNI	CGCG	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	442
BsrI	ACTGG	3 cut(s)	163, 282, 429
BssHII	GCGCGC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	36, 306
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	97, 99
BstMAI	GTCTC	3 cut(s)	23, 185, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 362, 365
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	7 cut(s)	73, 111, 114, 188, 343, 377, 380
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	258, 391
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	2 cut(s)	97, 99
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	3 cut(s)	275, 479, 493
CviJI	RGCY	5 cut(s)	40, 201, 258, 310, 391
CviKI_1	RGCY	5 cut(s)	40, 201, 258, 310, 391
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	36, 306
EaeI	YGGCCR	1 cut(s)	256
FaeI	CATG	3 cut(s)	278, 482, 496
FaiI	YATR	4 cut(s)	266, 276, 480, 494
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 315, 347
FatI	CATG	3 cut(s)	274, 478, 492
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	7 cut(s)	87, 100, 103, 202, 357, 366, 369
Fsp4HI	GCNGC	7 cut(s)	87, 100, 103, 202, 357, 366, 369
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	2 cut(s)	96, 98
GluI	GCNGC	7 cut(s)	87, 100, 103, 202, 357, 366, 369
HaeIII	GGCC	2 cut(s)	258, 391
HapII	CCGG	2 cut(s)	136, 402
HhaI	GCGC	2 cut(s)	97, 99
Hin1II	CATG	3 cut(s)	278, 482, 496
Hin6I	GCGC	2 cut(s)	95, 97
HinP1I	GCGC	2 cut(s)	95, 97
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	20, 72, 290, 342
HpaII	CCGG	2 cut(s)	136, 402
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	3 cut(s)	191, 222, 453
Hpy188I	TCNGA	1 cut(s)	241
Hpy8I	GTNNAC	3 cut(s)	191, 222, 453
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	50, 223, 320
HpyCH4V	TGCA	3 cut(s)	89, 236, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 362, 365
HpyF3I	CTNAG	2 cut(s)	36, 306
Hsp92II	CATG	3 cut(s)	278, 482, 496
HspAI	GCGC	2 cut(s)	95, 97
LpnPI	CCDG	8 cut(s)	66, 149, 176, 295, 336, 405, 415, 442
Lsp1109I	GCAGC	7 cut(s)	73, 111, 114, 188, 343, 377, 380
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	208
MbiI	CCGCTC	1 cut(s)	442
MnlI	CCTC	3 cut(s)	10, 280, 475
MseI	TTAA	1 cut(s)	50
MspI	CCGG	2 cut(s)	136, 402
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	92, 362, 365
NlaIII	CATG	3 cut(s)	278, 482, 496
NmuCI	GTSAC	1 cut(s)	208
PauI	GCGCGC	1 cut(s)	95
PfeI	GAWTC	4 cut(s)	20, 72, 290, 342
PkrI	GCNGC	7 cut(s)	88, 101, 104, 203, 358, 367, 370
PstNI	CAGNNNCTG	1 cut(s)	11
PteI	GCGCGC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	7 cut(s)	87, 100, 103, 202, 357, 366, 369
SetI	ASST	7 cut(s)	42, 50, 61, 203, 234, 312, 331
SfaNI	GCATC	1 cut(s)	245
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	206
TfiI	GAWTC	4 cut(s)	20, 72, 290, 342
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	7 cut(s)	86, 99, 102, 201, 356, 365, 368
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.