Rh2BG498200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009736
Physical Location & Seq
Forward (+)
70371093 .. 70372508
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG498200.1

Sequence Viewer

Length: 387 bp
ATGGGGAGAGGGGACGCGGGAGAGGTAGAGGTCGGCGACGAGGGGGAGGAAGCGGAGGACGAGGAGCTAGAGGTCGGGATCGGAGGACTGGGAGGAGTCGTAGAGCCAGAGGCAGAGGCGGGCCTTGAGGAGCTGCTTGGCTTTCTTGGCCTGCATGCGCTTCCCCCTGCCACTTGGATACGCCGCCGGGGAAGGTTCTGGGCACGCCGCCCCATTCGCATGGATGTGGGCTTTGGGGTTAGGGGTTTAAGGGAGAGGGAGAGGACGCCATGTCTCTTGTCGAATCAGCATCGGAACCTGAACCAGGTCCCGCCGGAGGAGGACGACAAGATCCAGACTGATGCACAATTGGATAACTCTACATCTTGTGTAGCGGGACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.97

Weight (kDa)

4.54

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 7 cut(s) 17, 53, 119, 184, 208, 311, 374
AclWI GGATC 2 cut(s) 86, 325
AcyI GRCGYC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 304, 316
AhdI GACNNNNNGTC 1 cut(s) 270
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 67, 133, 383
AluI AGCT 3 cut(s) 67, 133, 383
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 86, 325
AoxI GGCC 2 cut(s) 121, 148
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 121, 307
AsuC2I CCSGG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 3 cut(s) 134, 184, 208
BlsI GCNGC 3 cut(s) 135, 185, 209
Bme1390I CCNGG 2 cut(s) 188, 305
Bme18I GGWCC 1 cut(s) 307
BmeRI GACNNNNNGTC 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 121, 307
BmiI GGNNCC 2 cut(s) 296, 309
BmrFI CCNGG 2 cut(s) 188, 305
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 298, 331
BmuI ACTGGG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 316
Bse1I ACTGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 304, 316
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 4 cut(s) 77, 108, 143, 332
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 123, 150
BsiSI CCGG 2 cut(s) 187, 314
BslFI GGGAC 2 cut(s) 26, 293
BslI CCNNNNNNNGG 2 cut(s) 304, 316
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 26, 293
BsnI GGCC 2 cut(s) 123, 150
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 78, 330
BspACI CCGC 7 cut(s) 17, 53, 119, 184, 208, 311, 374
BspANI GGCC 2 cut(s) 123, 150
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 296, 309
BspPI GGATC 2 cut(s) 86, 325
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 78, 330
BssNI GRCGYC 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 305
BstACI GRCGYC 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 121, 152, 156, 205
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 81, 333
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 78, 330
BstMWI GCNNNNNNNGC 3 cut(s) 147, 216, 380
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 186, 303
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 330
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 330
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 123, 150
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 4 cut(s) 121, 152, 156, 205
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 121, 307
CseI GACGC 2 cut(s) 23, 274
CsiI ACCWGGT 1 cut(s) 303
CviAII CATG 3 cut(s) 155, 220, 270
CviJI RGCY 8 cut(s) 67, 106, 123, 133, 141, 150, 231, 383
CviKI_1 RGCY 8 cut(s) 67, 106, 123, 133, 141, 150, 231, 383
DpnI GATC 2 cut(s) 80, 332
DpnII GATC 2 cut(s) 78, 330
DriI GACNNNNNGTC 1 cut(s) 270
Eam1105I GACNNNNNGTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 307
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 158, 223, 273
FaiI YATR 3 cut(s) 156, 221, 271
FaqI GGGAC 2 cut(s) 26, 293
FatI CATG 3 cut(s) 154, 219, 269
FauI CCCGC 4 cut(s) 10, 112, 318, 367
Fnu4HI GCNGC 3 cut(s) 134, 184, 208
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 134, 184, 208
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 134, 184, 208
HaeIII GGCC 2 cut(s) 123, 150
HapII CCGG 2 cut(s) 187, 314
HgaI GACGC 2 cut(s) 23, 274
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 3 cut(s) 158, 223, 273
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 2 cut(s) 96, 283
HpaII CCGG 2 cut(s) 187, 314
Hpy188I TCNGA 2 cut(s) 83, 294
Hpy188III TCNNGA 2 cut(s) 76, 334
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 154, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 216, 380
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 3 cut(s) 158, 223, 273
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 78, 330
LmnI GCTCC 2 cut(s) 64, 130
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 298, 331
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 1 cut(s) 68
MalI GATC 2 cut(s) 80, 332
MboI GATC 2 cut(s) 78, 330
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 347
MlyI GAGTC 1 cut(s) 105
MseI TTAA 2 cut(s) 248, 385
MslI CAYNNNNRTG 2 cut(s) 218, 224
MspI CCGG 2 cut(s) 187, 314
MspR9I CCNGG 2 cut(s) 188, 305
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 147, 216, 380
NciI CCSGG 1 cut(s) 188
NdeII GATC 2 cut(s) 78, 330
NlaIII CATG 3 cut(s) 158, 223, 273
NlaIV GGNNCC 2 cut(s) 296, 309
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 3 cut(s) 135, 185, 209
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 296, 309
PspPI GGNCC 2 cut(s) 121, 307
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 1 cut(s) 330
RseI CAYNNNNRTG 2 cut(s) 218, 224
SaqAI TTAA 2 cut(s) 248, 385
SatI GCNGC 3 cut(s) 134, 184, 208
Sau3AI GATC 2 cut(s) 78, 330
Sau96I GGNCC 2 cut(s) 121, 307
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 188, 305
SduI GDGCHC 1 cut(s) 205
SetI ASST 9 cut(s) 27, 33, 69, 75, 135, 197, 300, 309, 385
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 2 cut(s) 298, 331
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 218, 224
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SphI GCATGC 1 cut(s) 158
Sse9I AATT 1 cut(s) 347
SsiI CCGC 7 cut(s) 17, 53, 119, 184, 208, 311, 374
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 186, 303
TaqI TCGA 1 cut(s) 281
TasI AATT 1 cut(s) 347
TauI GCSGC 2 cut(s) 186, 210
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 2 cut(s) 248, 385
Tru9I TTAA 2 cut(s) 248, 385
TseI GCWGC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 302
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.