Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

2839933 .. 2840586

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGAGTAAACACAAGTTTCAAGTTACCAGTGGTATCCGGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAGCAGCAGCAGCAATAAAGTTGGCAAAAAAGAAAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTCGGAGAGCGGTATCTGTCTACTGCACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

86

Amino Acids

9.1

Weight (kDa)

8.03

Isoelectric Point (pI)

19.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 62	6.5e-09	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	50
ApeKI	GCWGC	5 cut(s)	113, 116, 119, 122, 125
AsuHPI	GGTGA	1 cut(s)	53
BbvI	GCAGC	5 cut(s)	100, 128, 131, 134, 137
BciVI	GTATCC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	5 cut(s)	115, 118, 121, 124, 127
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	29, 186
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	29, 186
BseXI	GCAGC	5 cut(s)	100, 128, 131, 134, 137
BsgI	GTGCAG	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	39, 159
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	50
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	29, 186
BstDEI	CTNAG	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 122, 125
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	100, 128, 131, 134, 137
BsuI	GTATCC	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	36
CviAII	CATG	2 cut(s)	236, 250
CviJI	RGCY	1 cut(s)	67
CviKI_1	RGCY	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	63
FaeI	CATG	2 cut(s)	239, 253
FaiI	YATR	2 cut(s)	237, 251
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	2 cut(s)	235, 249
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
Fsp4HI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
GluI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
HapII	CCGG	2 cut(s)	39, 159
Hin1II	CATG	2 cut(s)	239, 253
HinfI	GANTC	2 cut(s)	47, 99
HpaII	CCGG	2 cut(s)	39, 159
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	2 cut(s)	10, 210
Hpy188I	TCNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	10, 210
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	116, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 122, 125
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	239, 253
LpnPI	CCDG	5 cut(s)	42, 52, 93, 172, 199
Lsp1109I	GCAGC	5 cut(s)	100, 128, 131, 134, 137
MaeIII	GTNAC	1 cut(s)	24
MbiI	CCGCTC	1 cut(s)	199
MnlI	CCTC	2 cut(s)	37, 232
MseI	TTAA	1 cut(s)	77
MspI	CCGG	2 cut(s)	39, 159
MwoI	GCNNNNNNNGC	3 cut(s)	119, 122, 125
NlaIII	CATG	2 cut(s)	239, 253
PfeI	GAWTC	2 cut(s)	47, 99
PkrI	GCNGC	5 cut(s)	115, 118, 121, 124, 127
PstI	CTGCAG	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	5 cut(s)	114, 117, 120, 123, 126
SetI	ASST	2 cut(s)	69, 88
SfcI	CTRYAG	1 cut(s)	114
SsiI	CCGC	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	47, 99
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	5 cut(s)	113, 116, 119, 122, 125
TspRI	CASTG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.