Rh4CG214300

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009736
Physical Location & Seq
Forward (+)
44401402 .. 44404475
3074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG214300.1

Sequence Viewer

Length: 318 bp
ATGAGGCAACTGCCTTCTCTGTATTCTCTGCTTGGTTTCTCCTACCATCATGCTTCTATATCAATTACTGATGATGAAAAAGATATATCAAGTGATGAAGCAATTGAAACTGCCAAGCTTCTTGCAACAAAAGAAGGTTTGCTTGTGGGAATATCATCTGGTGCTGCTGCCGCTGCTGCAATTAGGATTGCAAAGAGACCAGAGAATGCTGGAAAGCTCATTGTTGTGGTTTTCCCAAGCTTTGGAGAGAGATATCTCTCCTCTGTGCTGTTTGAGTCAGTGAGACGGGAAGCTGAAAGCATGACCTTTGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

105

Amino Acids

11.38

Weight (kDa)

5.33

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 21 - 79 2.1e-09 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 4 cut(s) 118, 217, 240, 293
AluI AGCT 4 cut(s) 118, 217, 240, 293
Alw26I GTCTC 3 cut(s) 190, 277, 305
ApeKI GCWGC 4 cut(s) 164, 167, 173, 176
BbvI GCAGC 4 cut(s) 151, 154, 160, 163
BccI CCATC 1 cut(s) 54
BcoDI GTCTC 3 cut(s) 190, 277, 305
BisI GCNGC 5 cut(s) 165, 168, 171, 174, 177
BlsI GCNGC 5 cut(s) 166, 169, 172, 175, 178
BsaI GGTCTC 2 cut(s) 190, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 4 cut(s) 151, 154, 160, 163
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 3 cut(s) 190, 277, 305
BsmBI CGTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 211
Bso31I GGTCTC 2 cut(s) 190, 305
BspACI CCGC 1 cut(s) 171
BspTNI GGTCTC 2 cut(s) 190, 305
BstMAI GTCTC 3 cut(s) 190, 277, 305
BstMWI GCNNNNNNNGC 3 cut(s) 170, 173, 176
BstV1I GCAGC 4 cut(s) 151, 154, 160, 163
BtsIMutI CAGTG 1 cut(s) 285
CviAII CATG 2 cut(s) 50, 301
CviJI RGCY 4 cut(s) 118, 217, 240, 293
CviKI_1 RGCY 4 cut(s) 118, 217, 240, 293
Eco31I GGTCTC 2 cut(s) 190, 305
Eco32I GATATC 1 cut(s) 254
EcoRV GATATC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 2 cut(s) 53, 304
FaiI YATR 4 cut(s) 51, 59, 86, 302
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 2 cut(s) 49, 300
Fnu4HI GCNGC 5 cut(s) 165, 168, 171, 174, 177
Fsp4HI GCNGC 5 cut(s) 165, 168, 171, 174, 177
GluI GCNGC 5 cut(s) 165, 168, 171, 174, 177
Hin1II CATG 2 cut(s) 53, 304
HindIII AAGCTT 2 cut(s) 116, 238
HinfI GANTC 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 24, 128
HpyCH4V TGCA 3 cut(s) 125, 179, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 173, 176
Hsp92II CATG 2 cut(s) 53, 304
LpnPI CCDG 3 cut(s) 144, 195, 213
Lsp1109I GCAGC 4 cut(s) 151, 154, 160, 163
MfeI CAATTG 1 cut(s) 102
MluCI AATT 3 cut(s) 63, 102, 180
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 173
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 211
MwoI GCNNNNNNNGC 3 cut(s) 170, 173, 176
NlaIII CATG 2 cut(s) 53, 304
PctI GAATGC 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 5 cut(s) 166, 169, 172, 175, 178
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 224
SatI GCNGC 5 cut(s) 165, 168, 171, 174, 177
SchI GAGTC 1 cut(s) 284
SetI ASST 7 cut(s) 120, 139, 219, 242, 295, 308, 317
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 3 cut(s) 63, 102, 180
SsiI CCGC 1 cut(s) 171
TasI AATT 3 cut(s) 63, 102, 180
TauI GCSGC 1 cut(s) 173
TscAI CASTG 1 cut(s) 285
TseI GCWGC 4 cut(s) 164, 167, 173, 176
TspDTI ATGAA 2 cut(s) 90, 111
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.