Rh3AG041400

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009736
Physical Location & Seq
Forward (+)
2781591 .. 2785182
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG041400.1

Sequence Viewer

Length: 576 bp
ATGGTGGAAGAGAAGGCTTGGATTGCAAAAGATGTTACTGAATTGGTTGGCAACACTCCATTGGTGTATCTCAACCATGTCGTAGATGGCTGTGTGGCACGGGTTGCTGCTAAGCTGGAGATGATGGAGCCTTGCTCTAGCGTCAAGGATAGGATTGGATACAGTATGATCACAGATGCTGAGGAGAAGGGTCTTATTAAGGCTGGTGAGCTCTACGGTGTAGAACCAGTTGAAAGTGCTGTCTTGTCTGGAGGGCGACCTGGCCCTCACAAGATTCAAGGAATTGGTGCTGGCTTCATCCCTGGAGTTTTAGATGTCAGCCTAATTGATGAAGTTATCCAAATATCAAGTGAAGAAGCAATTGAAACAGCCAAGCGTCTAGCATTGAAGGAAGGTTTGTTGGTAGGGATATCATCTGGTGCTGCAGCTGCAGCTGCTATTGAGATTGCAAGGAGGCCAGCAAACGCTGGAAAGCTCATTGTTGTGGTCTTCCCCAGCTTTGGAGAGCGTTACCTCTCCTCTGTATTGTTTGAATCTGTGAAGCGGGAGGCAGAGAACATGGTTTTTGAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

191

Amino Acids

20.28

Weight (kDa)

4.91

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 12 - 63 8.1e-08 Pyridoxal-phosphate dependent enzyme
PALP PF00291 70 - 165 3.8e-15 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 544
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 5 cut(s) 233, 278, 365, 388, 533
AjnI CCWGG 2 cut(s) 259, 301
AluBI AGCT 6 cut(s) 115, 211, 428, 434, 475, 498
AluI AGCT 6 cut(s) 115, 211, 428, 434, 475, 498
Alw21I GWGCWC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 2 cut(s) 262, 455
ApeKI GCWGC 6 cut(s) 107, 422, 425, 428, 431, 434
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 218
BanII GRGCYC 2 cut(s) 213, 573
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 6 cut(s) 94, 409, 415, 421, 437, 443
BccI CCATC 2 cut(s) 80, 118
BciT130I CCWGG 2 cut(s) 261, 303
BciVI GTATCC 1 cut(s) 152
BclI TGATCA 1 cut(s) 168
BfaI CTAG 2 cut(s) 138, 380
BfmI CTRYAG 2 cut(s) 423, 429
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 6 cut(s) 108, 423, 426, 429, 432, 435
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 6 cut(s) 109, 424, 427, 430, 433, 436
Bme1390I CCNGG 2 cut(s) 261, 303
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 261, 303
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 481
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 3 cut(s) 137, 270, 324
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 2 cut(s) 261, 303
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 197, 508
BseXI GCAGC 6 cut(s) 94, 409, 415, 421, 437, 443
BseYI CCCAGC 1 cut(s) 494
BshFI GGCC 2 cut(s) 264, 457
BsiHKAI GWGCWC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 500
BsnI GGCC 2 cut(s) 264, 457
Bsp1286I GDGCHC 2 cut(s) 213, 573
Bsp143I GATC 1 cut(s) 168
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 1 cut(s) 544
BspANI GGCC 2 cut(s) 264, 457
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 2 cut(s) 427, 433
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 261, 303
Bst4CI ACNGT 2 cut(s) 164, 218
Bst6I CTCTTC 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 292, 459
BstDEI CTNAG 2 cut(s) 111, 180
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 5 cut(s) 23, 104, 428, 431, 434
BstNI CCWGG 2 cut(s) 261, 303
BstSCI CCNGG 2 cut(s) 259, 301
BstSFI CTRYAG 2 cut(s) 423, 429
BstV1I GCAGC 6 cut(s) 94, 409, 415, 421, 437, 443
BstV2I GAAGAC 1 cut(s) 481
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 264, 457
BtsCI GGATG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 292, 459
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 2 cut(s) 130, 365
CviAII CATG 2 cut(s) 77, 559
DdeI CTNAG 2 cut(s) 111, 180
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 2 cut(s) 213, 573
Eco32I GATATC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 259, 301
EcoRV GATATC 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 213, 573
FaeI CATG 2 cut(s) 80, 562
FaiI YATR 3 cut(s) 78, 167, 560
FatI CATG 2 cut(s) 76, 558
FauI CCCGC 1 cut(s) 537
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 6 cut(s) 108, 423, 426, 429, 432, 435
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 2 cut(s) 213, 573
Fsp4HI GCNGC 6 cut(s) 108, 423, 426, 429, 432, 435
FspBI CTAG 2 cut(s) 138, 380
GluI GCNGC 6 cut(s) 108, 423, 426, 429, 432, 435
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 3 cut(s) 137, 270, 324
HaeIII GGCC 2 cut(s) 264, 457
HgaI GACGC 2 cut(s) 130, 365
Hin1II CATG 2 cut(s) 80, 562
HinfI GANTC 2 cut(s) 274, 533
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 249
HpyAV CCTTC 4 cut(s) 7, 181, 382, 386
HpyCH4III ACNGT 2 cut(s) 164, 218
HpyCH4V TGCA 4 cut(s) 26, 425, 431, 449
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 104, 428, 431, 434
HpyF3I CTNAG 2 cut(s) 111, 180
Hsp92II CATG 2 cut(s) 80, 562
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 6 cut(s) 94, 409, 415, 421, 437, 443
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 138, 380
MaeIII GTNAC 2 cut(s) 34, 509
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 3 cut(s) 20, 365, 481
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 213, 573
MluCI AATT 4 cut(s) 41, 282, 324, 360
MnlI CCTC 7 cut(s) 175, 245, 276, 447, 524, 529, 541
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 428, 434
MspR9I CCNGG 2 cut(s) 261, 303
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 2 cut(s) 261, 303
MwoI GCNNNNNNNGC 5 cut(s) 23, 104, 428, 431, 434
NdeII GATC 1 cut(s) 168
NlaIII CATG 2 cut(s) 80, 562
NlaIV GGNNCC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 274, 533
PkrI GCNGC 6 cut(s) 109, 424, 427, 430, 433, 436
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 259, 301
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 2 cut(s) 259, 301
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 263
PstI CTGCAG 2 cut(s) 427, 433
PstNI CAGNNNCTG 1 cut(s) 179
PvuII CAGCTG 2 cut(s) 428, 434
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 6 cut(s) 108, 423, 426, 429, 432, 435
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 261, 303
SduI GDGCHC 2 cut(s) 213, 573
SetI ASST 9 cut(s) 117, 213, 262, 397, 430, 436, 477, 500, 516
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 423, 429
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 4 cut(s) 41, 282, 324, 360
SsiI CCGC 1 cut(s) 544
SspMI CTAG 2 cut(s) 138, 380
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 259, 301
TaaI ACNGT 2 cut(s) 164, 218
TasI AATT 4 cut(s) 41, 282, 324, 360
TfiI GAWTC 2 cut(s) 274, 533
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 6 cut(s) 107, 422, 425, 428, 431, 434
TspDTI ATGAA 2 cut(s) 286, 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 2 cut(s) 138, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.