Rh3CG041700

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009736
Physical Location & Seq
Forward (+)
2781591 .. 2785182
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG041700.1

Sequence Viewer

Length: 483 bp
ATGGTGGAAGAGAAGGCTTGGATTGCAAAAGATGTTACTGAATATGAAAGTTCTAAATTGGACCTTTTCTTCCTTGTGAAAGTTGTACTCAAATTCCATGTCTCCAGGAGAAAATTCTATTGTTCCAGGATTGGATACAGTATGATCACAGATGCTGAGGAGAAGGGTCTTATTAAGGCTGGTGAGAGTGAGGCTATAATTGTGGCTGGAGCTCTTTATTTAGAATTTAATAATCAATCCGGACCTTGTATATCAAGTGAAGAAGCAATTGAAACAGCCAAGCGTCTAGCATTGAAGGAAGGTTTGTTGGTAGGGATATCATCTGGTGCTGCAGCTGCAGCTGCTATTGAGATTGCAAGGAGGCCAGCAAACGCTGGAAAGCTCATTGTTGTGGTCTTCCCCAGCTTTGGAGAGCGTTACCTCTCCTCTGTATTGTTTGAATCTGTGAAGCGGGAGGCAGAGAACATGGTTTTTGAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

160

Amino Acids

17.57

Weight (kDa)

5.6

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 84 - 134 1.5e-07 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 1 cut(s) 451
AcsI RAATTY 3 cut(s) 92, 113, 224
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 272, 295, 440
AjnI CCWGG 2 cut(s) 104, 125
AluBI AGCT 5 cut(s) 212, 335, 341, 382, 405
AluI AGCT 5 cut(s) 212, 335, 341, 382, 405
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 5 cut(s) 329, 332, 335, 338, 341
ApoI RAATTY 3 cut(s) 92, 113, 224
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AspS9I GGNCC 2 cut(s) 61, 242
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 2 cut(s) 61, 242
BanII GRGCYC 2 cut(s) 214, 480
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 5 cut(s) 316, 322, 328, 344, 350
BciT130I CCWGG 2 cut(s) 106, 127
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 2 cut(s) 330, 336
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 5 cut(s) 330, 333, 336, 339, 342
BlsI GCNGC 5 cut(s) 331, 334, 337, 340, 343
Bme1390I CCNGG 2 cut(s) 106, 127
Bme18I GGWCC 2 cut(s) 61, 242
BmgT120I GGNCC 2 cut(s) 61, 242
BmrFI CCNGG 2 cut(s) 106, 127
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 388
BpmI CTGGAG 2 cut(s) 88, 228
Bpu10I CCTNAGC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 407
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 2 cut(s) 106, 127
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 173, 415
BseXI GCAGC 5 cut(s) 316, 322, 328, 344, 350
BseYI CCCAGC 1 cut(s) 401
BshFI GGCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 214, 480
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 451
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 239
BspMAI CTGCAG 2 cut(s) 334, 340
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 106, 127
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 156
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 23, 335, 338, 341
BstNI CCWGG 2 cut(s) 106, 127
BstSCI CCNGG 2 cut(s) 104, 125
BstSFI CTRYAG 2 cut(s) 330, 336
BstV1I GCAGC 5 cut(s) 316, 322, 328, 344, 350
BstV2I GAAGAC 1 cut(s) 388
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 61, 242
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 86
CviAII CATG 2 cut(s) 98, 466
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 212
Eco24I GRGCYC 2 cut(s) 214, 480
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 61, 242
Eco53kI GAGCTC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 104, 125
EcoRV GATATC 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 214, 480
FaeI CATG 2 cut(s) 101, 469
FaiI YATR 6 cut(s) 45, 99, 143, 197, 251, 467
FatI CATG 2 cut(s) 97, 465
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 5 cut(s) 330, 333, 336, 339, 342
FriOI GRGCYC 2 cut(s) 214, 480
Fsp4HI GCNGC 5 cut(s) 330, 333, 336, 339, 342
FspBI CTAG 1 cut(s) 287
GluI GCNGC 5 cut(s) 330, 333, 336, 339, 342
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 2 cut(s) 88, 228
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 240
HgaI GACGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 101, 469
HinfI GANTC 1 cut(s) 440
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 240
HpyAV CCTTC 4 cut(s) 7, 157, 289, 293
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 26, 332, 338, 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 335, 338, 341
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 101, 469
Kpn2I TCCGGA 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 5 cut(s) 316, 322, 328, 344, 350
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 34, 416
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 4 cut(s) 20, 61, 272, 388
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 214, 480
MluCI AATT 6 cut(s) 56, 92, 113, 198, 224, 267
MnlI CCTC 6 cut(s) 151, 184, 354, 431, 436, 448
MroI TCCGGA 1 cut(s) 239
MseI TTAA 2 cut(s) 174, 228
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 2 cut(s) 335, 341
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 106, 127
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 106, 127
MwoI GCNNNNNNNGC 4 cut(s) 23, 335, 338, 341
NdeII GATC 1 cut(s) 144
NlaIII CATG 2 cut(s) 101, 469
PfeI GAWTC 1 cut(s) 440
PfoI TCCNGGA 2 cut(s) 104, 125
PkrI GCNGC 5 cut(s) 331, 334, 337, 340, 343
Psp124BI GAGCTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 104, 125
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 2 cut(s) 104, 125
PspPI GGNCC 2 cut(s) 61, 242
PstI CTGCAG 2 cut(s) 334, 340
PstNI CAGNNNCTG 1 cut(s) 155
PvuII CAGCTG 2 cut(s) 335, 341
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 174, 228
SatI GCNGC 5 cut(s) 330, 333, 336, 339, 342
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 61, 242
ScrFI CCNGG 2 cut(s) 106, 127
SduI GDGCHC 2 cut(s) 214, 480
SetI ASST 9 cut(s) 66, 214, 247, 304, 337, 343, 384, 407, 423
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 2 cut(s) 330, 336
SinI GGWCC 2 cut(s) 61, 242
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 6 cut(s) 56, 92, 113, 198, 224, 267
SsiI CCGC 1 cut(s) 451
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 104, 125
TaaI ACNGT 1 cut(s) 140
TasI AATT 6 cut(s) 56, 92, 113, 198, 224, 267
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 2 cut(s) 174, 228
Tru9I TTAA 2 cut(s) 174, 228
TseI GCWGC 5 cut(s) 329, 332, 335, 338, 341
TspDTI ATGAA 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 61, 242
XapI RAATTY 3 cut(s) 92, 113, 224
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.