Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

2829903 .. 2830381

Gene Structure 479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCTCATAATTCTGCAGGTATCCAGTGAGGAATCTATCGAGACTGCTAGGCTGCTTGCCCTAAAAGAAGGTCTTTTGGTGGGGATCTCATCTGGTGCTGCAGCAGCAGTAGCAATAAAGTTGGCAAAGAAGCAGGAAAATGCTGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTCGGAGAGCGGTATCTGTCTTCTCCACTTTTTGATACCATTAGGCATGAGGCAGAAAAAATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

81

Amino Acids

8.75

Weight (kDa)

6.57

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	4 - 57	1.5e-09	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	7
AccBSI	CCGCTC	1 cut(s)	184
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	92
ApeKI	GCWGC	4 cut(s)	52, 98, 101, 104
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	39, 85, 113, 116
BciVI	GTATCC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	2 cut(s)	14, 99
BfuAI	ACCTGC	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	4 cut(s)	53, 99, 102, 105
BlsI	GCNGC	4 cut(s)	54, 100, 103, 106
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	24, 171
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	24, 171
BseXI	GCAGC	4 cut(s)	39, 85, 113, 116
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	18, 103
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	24, 171
BssMI	GATC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 110
BstSFI	CTRYAG	2 cut(s)	14, 99
BstV1I	GCAGC	4 cut(s)	39, 85, 113, 116
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	57
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	1 cut(s)	52
CviKI_1	RGCY	1 cut(s)	52
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	8, 222
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	53, 99, 102, 105
Fsp4HI	GCNGC	4 cut(s)	53, 99, 102, 105
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	4 cut(s)	53, 99, 102, 105
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	16, 101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 110
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	84
LpnPI	CCDG	6 cut(s)	2, 37, 78, 119, 129, 184
Lsp1109I	GCAGC	4 cut(s)	39, 85, 113, 116
MaeI	CTAG	1 cut(s)	48
MalI	GATC	1 cut(s)	86
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	186
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	1 cut(s)	9
MnlI	CCTC	2 cut(s)	22, 217
MwoI	GCNNNNNNNGC	2 cut(s)	104, 110
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	54, 100, 103, 106
PstI	CTGCAG	2 cut(s)	18, 103
PsuI	RGATCY	1 cut(s)	84
SatI	GCNGC	4 cut(s)	53, 99, 102, 105
Sau3AI	GATC	1 cut(s)	84
SetI	ASST	2 cut(s)	21, 73
SfcI	CTRYAG	2 cut(s)	14, 99
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	48
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	4 cut(s)	52, 98, 101, 104
TspRI	CASTG	1 cut(s)	31
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.