Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009736

Physical Location & Seq

Genomic Coordinates Forward (+)

3262889 .. 3266382

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG047800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAATGGAAAAGGGCACAACTATTGACTGGAATTACTACTAACCTTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTAGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

88

Amino Acids

9.61

Weight (kDa)

7.88

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	10 - 64	2.6e-08	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112351
rosa_laevigata	RLG00000013687 RLG00000027500
rosa_multiflora	Rmu_sc0000945.1_g000049
rosa_samantha	Rh2BG498200 Rh3AG041400 Rh3BG043300 Rh3BG043500 Rh3BG043700 Rh3BG043800 Rh3BG049100 Rh3CG041700 Rh3CG041900 Rh3CG042000 Rh3CG042300 Rh3CG042500 Rh3CG042600 Rh3CG047800 Rh4AG133400 Rh4AG201600 Rh4CG141200 Rh4CG214300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	119, 128, 131
BaeGI	GKGCMC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	106, 140, 143
BcoDI	GTCTC	1 cut(s)	56
BisI	GCNGC	3 cut(s)	120, 129, 132
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	3 cut(s)	121, 130, 133
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	34, 192
Bse8I	GATNNNNATC	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	34, 192
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	106, 140, 143
BshFI	GGCC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	34, 192
BstDEI	CTNAG	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 128
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	3 cut(s)	106, 140, 143
BsuRI	GGCC	1 cut(s)	154
CviAII	CATG	2 cut(s)	242, 256
CviJI	RGCY	2 cut(s)	73, 154
CviKI_1	RGCY	2 cut(s)	73, 154
DdeI	CTNAG	1 cut(s)	69
FaeI	CATG	2 cut(s)	245, 259
FaiI	YATR	2 cut(s)	243, 257
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	2 cut(s)	241, 255
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	3 cut(s)	120, 129, 132
Fsp4HI	GCNGC	3 cut(s)	120, 129, 132
GluI	GCNGC	3 cut(s)	120, 129, 132
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	2 cut(s)	245, 259
HinfI	GANTC	2 cut(s)	53, 105
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 128
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	245, 259
LpnPI	CCDG	5 cut(s)	15, 99, 168, 178, 205
Lsp1109I	GCAGC	3 cut(s)	106, 140, 143
MbiI	CCGCTC	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	2 cut(s)	43, 238
MspI	CCGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	125, 128
NlaIII	CATG	2 cut(s)	245, 259
PfeI	GAWTC	2 cut(s)	53, 105
PkrI	GCNGC	3 cut(s)	121, 130, 133
SatI	GCNGC	3 cut(s)	120, 129, 132
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	3 cut(s)	48, 75, 94
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	205
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	53, 105
TseI	GCWGC	3 cut(s)	119, 128, 131
TspDTI	ATGAA	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.