RchiOBHm_Chr2g0112531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008894
Physical Location & Seq
Reverse (-)
24519709 .. 24520143
435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48599

Sequence Viewer

Length: 183 bp
ATGGCCGAAATTTTACCCGGGTGGGTTTCCATTTCCGGAAACCACCCCAACTCTTTCTCTCTCCTCTCCCCCGATCTCTCTTCCTCCGGTTCGGCCCTTCTCCCTCTTCCATCAATTCCGGCGATTCCGGCCACCATCCGGCGTGCAACCGGTCACCACAGGGGCGCCTCAACCCGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.21

Weight (kDa)

11.52

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 1 cut(s) 175
AcoI YGGCCR 2 cut(s) 3, 129
AcsI RAATTY 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 35
AoxI GGCC 3 cut(s) 3, 93, 129
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 18, 19
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 17
BanI GGYRCC 1 cut(s) 164
BccI CCATC 2 cut(s) 118, 143
BcnI CCSGG 2 cut(s) 18, 19
BfoI RGCGCY 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 18, 19
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 18, 19
BpuMI CCSGG 2 cut(s) 18, 19
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 3 cut(s) 35, 86, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 3 cut(s) 5, 95, 131
BshNI GGYRCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 7 cut(s) 18, 36, 87, 119, 128, 139, 150
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 3 cut(s) 5, 95, 131
BsoBI CYCGRG 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 175
BspANI GGCC 3 cut(s) 5, 95, 131
BspEI TCCGGA 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 85, 111
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 16, 17
BsuRI GGCC 3 cut(s) 5, 95, 131
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 94
Cfr9I CCCGGG 1 cut(s) 17
CspAI ACCGGT 1 cut(s) 149
CviJI RGCY 3 cut(s) 5, 95, 131
CviKI_1 RGCY 3 cut(s) 5, 95, 131
DinI GGCGCC 1 cut(s) 166
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 3, 129
Eam1104I CTCTTC 2 cut(s) 85, 111
EarI CTCTTC 2 cut(s) 85, 111
Eco88I CYCGRG 1 cut(s) 17
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FokI GGATG 1 cut(s) 122
GlaI GCGC 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 3 cut(s) 5, 95, 131
HapII CCGG 7 cut(s) 18, 36, 87, 119, 128, 139, 150
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 1 cut(s) 124
HpaII CCGG 7 cut(s) 18, 36, 87, 119, 128, 139, 150
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
Kpn2I TCCGGA 1 cut(s) 35
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 31, 49, 100, 132, 141, 145, 152, 163
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 72, 98
MluCI AATT 2 cut(s) 9, 114
Mly113I GGCGCC 1 cut(s) 165
MnlI CCTC 4 cut(s) 74, 94, 114, 178
MroI TCCGGA 1 cut(s) 35
MspI CCGG 7 cut(s) 18, 36, 87, 119, 128, 139, 150
MspR9I CCNGG 2 cut(s) 18, 19
MwoI GCNNNNNNNGC 1 cut(s) 128
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 2 cut(s) 18, 19
NdeII GATC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 149
PluTI GGCGCC 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 18, 19
SfoI GGCGCC 1 cut(s) 166
SmaI CCCGGG 1 cut(s) 19
Sse9I AATT 2 cut(s) 9, 114
SsiI CCGC 1 cut(s) 175
SspDI GGCGCC 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 16, 17
TasI AATT 2 cut(s) 9, 114
TfiI GAWTC 1 cut(s) 124
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspMI CCCGGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 9
XmaI CCCGGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.