Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008894

Physical Location & Seq

Genomic Coordinates Forward (+)

53950137 .. 53952300

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAAAGTTACCCTGGTAGGTTTCCAAAACCGGAAACCCACCCCTCTTTCTCTCTCCTCTCCCCCGACTCTTCCCCCTTTCCCTTCGGGTTTTCTTCCTCCCTCCGATTCTTCACTTTCCGGCCACCATCCGGCGTGCAACCGGTCACCACAGGGGCGCCTCAACCCGCTCTTGAAACCAATGACCTAGGATTTTGGAGTTTTGGCCGTGAAAGTCCGGATCGAAGCAAAGATTGCTCCGGCTGCAGTTTTGGGATTTCGCCGATTTCCGACCATTCCGGCCACCTCCGGCCACCAGGGTTCTTGAGGTTTCGGGGCATTTCTTCACCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

7.87

Isoelectric Point (pI)

75.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008894)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326701 RchiOBHm_Chr1g0382121 RchiOBHm_Chr2g0112531 RchiOBHm_Chr2g0112991 RchiOBHm_Chr2g0114721 RchiOBHm_Chr2g0127921 RchiOBHm_Chr2g0127931 RchiOBHm_Chr2g0127941 RchiOBHm_Chr3g0495381 RchiOBHm_Chr4g0416991 RchiOBHm_Chr4g0429081 RchiOBHm_Chr4g0442281 RchiOBHm_Chr5g0078891 RchiOBHm_Chr6g0263681 RchiOBHm_Chr6g0266391 RchiOBHm_Chr6g0302751 RchiOBHm_Chr7g0187251 RchiOBHm_Chr7g0205541
rosa_multiflora	Rmu_sc0000026.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115450 Rroxscaffold_6G00398760
rosa_samantha	Rh6CG368200 Rh7AG027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AccBSI	CCGCTC	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	4 cut(s)	122, 205, 280, 290
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	2 cut(s)	142, 328
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	13, 295
AlwI	GGATC	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	4 cut(s)	122, 205, 280, 290
ApeKI	GCWGC	1 cut(s)	243
AsiGI	ACCGGT	2 cut(s)	142, 328
AspA2I	CCTAGG	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	139, 318
AvrII	CCTAGG	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	15, 297
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	1 cut(s)	244
BlnI	CCTAGG	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	15, 297
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	15, 297
BpuEI	CTTGAG	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	13, 187, 296
BsaWI	WCCGGW	4 cut(s)	31, 142, 217, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	2 cut(s)	142, 328
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	15, 297
BseDI	CCNNGG	3 cut(s)	13, 187, 296
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	4 cut(s)	124, 207, 282, 292
BshNI	GGYRCC	1 cut(s)	157
BshTI	ACCGGT	2 cut(s)	142, 328
BsiSI	CCGG	9 cut(s)	32, 121, 132, 143, 218, 240, 279, 289, 329
BslI	CCNNNNNNNGG	1 cut(s)	131
BsnI	GGCC	4 cut(s)	124, 207, 282, 292
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	4 cut(s)	124, 207, 282, 292
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	142, 328
BssAI	RCCGGY	2 cut(s)	142, 328
BssECI	CCNNGG	3 cut(s)	13, 187, 296
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	15, 297
Bst6I	CTCTTC	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	137
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 243
BstNI	CCWGG	2 cut(s)	15, 297
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	13, 295
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	124, 207, 282, 292
BtsCI	GGATG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	2 cut(s)	142, 328
CspAI	ACCGGT	2 cut(s)	142, 328
CviJI	RGCY	5 cut(s)	124, 207, 243, 282, 292
CviKI_1	RGCY	5 cut(s)	124, 207, 243, 282, 292
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	4 cut(s)	122, 205, 280, 290
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	13, 295
EcoT14I	CCWWGG	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	187
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	4 cut(s)	124, 207, 282, 292
HapII	CCGG	9 cut(s)	32, 121, 132, 143, 218, 240, 279, 289, 329
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	68, 108
HpaII	CCGG	9 cut(s)	32, 121, 132, 143, 218, 240, 279, 289, 329
HphI	GGTGA	2 cut(s)	139, 318
Hpy188I	TCNGA	2 cut(s)	107, 271
Hpy188III	TCNNGA	3 cut(s)	173, 218, 304
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	139, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 243
Hsp92I	GRCGYC	1 cut(s)	158
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	8, 145
MalI	GATC	1 cut(s)	222
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	1 cut(s)	220
MboII	GAAGA	4 cut(s)	63, 87, 103, 315
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	7 cut(s)	55, 68, 109, 113, 171, 296, 300
MroI	TCCGGA	1 cut(s)	217
MspI	CCGG	9 cut(s)	32, 121, 132, 143, 218, 240, 279, 289, 329
MspR9I	CCNGG	2 cut(s)	15, 297
MvaI	CCWGG	2 cut(s)	15, 297
MwoI	GCNNNNNNNGC	2 cut(s)	234, 243
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	108
PinAI	ACCGGT	2 cut(s)	142, 328
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	13, 295
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	13, 295
PspN4I	GGNNCC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	248
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	15, 297
SetI	ASST	4 cut(s)	23, 189, 288, 311
SfcI	CTRYAG	1 cut(s)	244
SfoI	GGCGCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SsiI	CCGC	1 cut(s)	168
SspDI	GGCGCC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	13, 295
StyI	CCWWGG	1 cut(s)	187
TaqI	TCGA	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	145
XmaJI	CCTAGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.