RchiOBHm_Chr4g0416991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008894
Physical Location & Seq
Forward (+)
42183166 .. 42189026
5861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38708

Sequence Viewer

Length: 312 bp
ATGAAACCTACCCAACCGGGTAAGTTCTCTCTTTCTCTCTCCCCGACTCTTTCTCCCCTCTCGGCCGATTTCTTCCCCCTCCCGTTTCTTCCTCCTCCGGCCGACCCAGGACACGATCCGGCCACCCCCAAGCTCGGTTTCTTCCCCTTGTCACGTCTGTGGAGGTATTTCACAACGATTTGGCCGGAAAAGCTCGGATCGAAACCAAATTCTCCCCGGCTGCAGTTTGAAGTTTTTGCCGATTTCCGGCGATTCCGGTCACCTCCGGTCCCCATCTCGCCGTCGAAGGGCAATGTCGCGAGCTACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.47

Weight (kDa)

10.2

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 299
AclWI GGATC 2 cut(s) 110, 205
AcoI YGGCCR 4 cut(s) 63, 99, 120, 182
AcsI RAATTY 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 134, 246, 287
AgsI TTSAA 1 cut(s) 230
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 3 cut(s) 133, 193, 303
AluI AGCT 3 cut(s) 133, 193, 303
AlwI GGATC 2 cut(s) 110, 205
AoxI GGCC 4 cut(s) 63, 99, 120, 182
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 2 cut(s) 18, 217
AsuHPI GGTGA 1 cut(s) 252
AvaII GGWCC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 108
BcnI CCSGG 2 cut(s) 18, 217
BfmI CTRYAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 3 cut(s) 18, 108, 217
Bme18I GGWCC 1 cut(s) 268
BmgBI CACGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 3 cut(s) 18, 108, 217
BpuMI CCSGG 2 cut(s) 18, 217
BsaJI CCNNGG 2 cut(s) 106, 215
BsaWI WCCGGW 2 cut(s) 255, 265
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 246, 287
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 106, 215
BseLI CCNNNNNNNGG 3 cut(s) 134, 246, 287
BseMI GCAATG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 84
BseX3I CGGCCG 2 cut(s) 63, 99
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 299
Bsh1285I CGRYCG 2 cut(s) 66, 102
BshFI GGCC 4 cut(s) 65, 101, 122, 184
BsiEI CGRYCG 2 cut(s) 66, 102
BsiSI CCGG 8 cut(s) 17, 98, 119, 185, 217, 247, 256, 266
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 134, 246, 287
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 4 cut(s) 65, 101, 122, 184
Bsp143I GATC 2 cut(s) 115, 197
Bsp68I TCGCGA 1 cut(s) 299
BspANI GGCC 4 cut(s) 65, 101, 122, 184
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 225
BspPI GGATC 2 cut(s) 110, 205
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 106, 215
BssMI GATC 2 cut(s) 115, 197
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 301
BstEII GGTNACC 1 cut(s) 258
BstFNI CGCG 1 cut(s) 299
BstKTI GATC 2 cut(s) 118, 200
BstMBI GATC 2 cut(s) 115, 197
BstMCI CGRYCG 2 cut(s) 66, 102
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 16, 106, 215
BstSFI CTRYAG 1 cut(s) 221
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 207
BstZI CGGCCG 2 cut(s) 63, 99
BsuRI GGCC 4 cut(s) 65, 101, 122, 184
BtrI CACGTC 1 cut(s) 155
BtuMI TCGCGA 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 268
CviJI RGCY 8 cut(s) 65, 101, 122, 133, 184, 193, 220, 303
CviKI_1 RGCY 8 cut(s) 65, 101, 122, 133, 184, 193, 220, 303
DpnI GATC 2 cut(s) 117, 199
DpnII GATC 2 cut(s) 115, 197
EaeI YGGCCR 4 cut(s) 63, 99, 120, 182
EagI CGGCCG 2 cut(s) 63, 99
EclXI CGGCCG 2 cut(s) 63, 99
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 2 cut(s) 63, 99
Eco91I GGTNACC 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 106
FaqI GGGAC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 4 cut(s) 65, 101, 122, 184
HapII CCGG 8 cut(s) 17, 98, 119, 185, 217, 247, 256, 266
HinfI GANTC 2 cut(s) 46, 252
HpaII CCGG 8 cut(s) 17, 98, 119, 185, 217, 247, 256, 266
HphI GGTGA 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 154
Kzo9I GATC 2 cut(s) 115, 197
Lsp1109I GCAGC 1 cut(s) 207
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 150, 258
MalI GATC 2 cut(s) 117, 199
MboI GATC 2 cut(s) 115, 197
MboII GAAGA 3 cut(s) 64, 80, 133
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 6 cut(s) 68, 89, 102, 105, 156, 273
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 8 cut(s) 17, 98, 119, 185, 217, 247, 256, 266
MspR9I CCNGG 3 cut(s) 18, 108, 217
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 190
NciI CCSGG 2 cut(s) 18, 217
NdeII GATC 2 cut(s) 115, 197
NlaIV GGNNCC 1 cut(s) 270
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 150, 258
NruI TCGCGA 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 157
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 225
RruI TCGCGA 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 157
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 115, 197
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 3 cut(s) 18, 108, 217
SetI ASST 7 cut(s) 10, 135, 157, 167, 195, 265, 305
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 1 cut(s) 208
StyD4I CCNGG 3 cut(s) 16, 106, 215
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 200, 284
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 252
TseFI GTSAC 2 cut(s) 150, 258
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 2 cut(s) 150, 258
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.