RchiOBHm_Chr5g0078891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008894
Physical Location & Seq
Forward (+)
84719643 .. 84720679
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35338

Sequence Viewer

Length: 519 bp
ATGCGAGAGTTATGGCCGAAATTTTACCCGGGTGGGTTTCCATTTCCGGAAACCACCCCAACTCTTTCTCTCTCCTCTCCCCCGATCTCTCTTCCTCCGGTTCGGCCCTTCTCCCTCTTCCATCAATTCCGGCGATTCCGGCCACCATCCGGCGTGCAACCGGTCACCACAGGGGCGCCTCAACCCGCTTGTGATACCAGTGACCTGGGTTTGGGGAGTTTTGGCCGGAAAAGCTCGATTTCACGCCGGGAAGGTAAGGTTGCAGTTTTGGGGATTTTGCCGATTTCCGGCCATTCCGGCCACCTCCGGCCACCATATTCACATCGAAGGTTCGGTTTTTGCAGGAGATCATTTTGCCTAAGGTCTTGCTTCTCAATTTGCTGTGTAGAGGTGGAATCGATCGAACCCGATTCTAGGGTTCTTGAGCTTTTCTGGAAAATTTTCACCGGTTCGATTCGGCCACTTAGAGGACGAGAGGAGTCTCCATACGAGGAAAATACCGAGCGACGTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

9.62

Isoelectric Point (pI)

88.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 1 cut(s) 186
AcoI YGGCCR 7 cut(s) 14, 140, 223, 289, 298, 308, 458
AcsI RAATTY 2 cut(s) 20, 438
AcyI GRCGYC 2 cut(s) 176, 508
AfiI CCNNNNNNNGG 5 cut(s) 149, 211, 287, 414, 467
AgeI ACCGGT 2 cut(s) 160, 446
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 2 cut(s) 234, 427
AluI AGCT 2 cut(s) 234, 427
Alw26I GTCTC 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 8 cut(s) 14, 104, 140, 223, 289, 298, 308, 458
ApoI RAATTY 2 cut(s) 20, 438
AsiGI ACCGGT 2 cut(s) 160, 446
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 105
AsuC2I CCSGG 3 cut(s) 29, 30, 248
AsuHPI GGTGA 2 cut(s) 157, 436
AvaI CYCGRG 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 359
BanI GGYRCC 1 cut(s) 175
BccI CCATC 2 cut(s) 129, 154
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 3 cut(s) 29, 30, 248
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 297
Bme1390I CCNGG 4 cut(s) 29, 30, 206, 248
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 4 cut(s) 29, 30, 206, 248
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 3 cut(s) 29, 30, 248
Bsa29I ATCGAT 1 cut(s) 398
BsaHI GRCGYC 2 cut(s) 176, 508
BsaJI CCNNGG 2 cut(s) 28, 205
BsaWI WCCGGW 4 cut(s) 46, 97, 160, 446
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 211, 287, 414, 467
Bse118I RCCGGY 2 cut(s) 160, 446
Bse1I ACTGG 1 cut(s) 198
Bse21I CCTNAGG 1 cut(s) 359
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 28, 205
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 5 cut(s) 149, 211, 287, 414, 467
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 2 cut(s) 64, 491
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 8 cut(s) 16, 106, 142, 225, 291, 300, 310, 460
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 2 cut(s) 160, 446
BshVI ATCGAT 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 28
BslI CCNNNNNNNGG 5 cut(s) 149, 211, 287, 414, 467
BsmAI GTCTC 1 cut(s) 486
BsnI GGCC 8 cut(s) 16, 106, 142, 225, 291, 300, 310, 460
BsoBI CYCGRG 1 cut(s) 28
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 3 cut(s) 84, 347, 399
BspACI CCGC 1 cut(s) 186
BspANI GGCC 8 cut(s) 16, 106, 142, 225, 291, 300, 310, 460
BspDI ATCGAT 1 cut(s) 398
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BsrFI RCCGGY 2 cut(s) 160, 446
BsrI ACTGG 1 cut(s) 198
BssAI RCCGGY 2 cut(s) 160, 446
BssECI CCNNGG 2 cut(s) 28, 205
BssMI GATC 3 cut(s) 84, 347, 399
BssNI GRCGYC 2 cut(s) 176, 508
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 96, 122
BstACI GRCGYC 2 cut(s) 176, 508
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 359, 464
BstEII GGTNACC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 3 cut(s) 87, 350, 402
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 3 cut(s) 84, 347, 399
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 139, 231, 297
BstNI CCWGG 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 4 cut(s) 27, 28, 204, 246
BstXI CCANNNNNNTGG 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 359
BsuRI GGCC 8 cut(s) 16, 106, 142, 225, 291, 300, 310, 460
BsuTUI ATCGAT 1 cut(s) 398
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 2 cut(s) 160, 446
Cfr13I GGNCC 1 cut(s) 105
Cfr9I CCCGGG 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 398
CspAI ACCGGT 2 cut(s) 160, 446
DdeI CTNAG 2 cut(s) 359, 464
DinI GGCGCC 1 cut(s) 177
DpnI GATC 3 cut(s) 86, 349, 401
DpnII GATC 3 cut(s) 84, 347, 399
EaeI YGGCCR 7 cut(s) 14, 140, 223, 289, 298, 308, 458
Eam1104I CTCTTC 2 cut(s) 96, 122
EarI CTCTTC 2 cut(s) 96, 122
Eco81I CCTNAGG 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
FaiI YATR 3 cut(s) 13, 316, 487
FauI CCCGC 1 cut(s) 193
FokI GGATG 1 cut(s) 133
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 8 cut(s) 16, 106, 142, 225, 291, 300, 310, 460
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 2 cut(s) 176, 508
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 5 cut(s) 135, 395, 410, 454, 479
HphI GGTGA 2 cut(s) 157, 436
Hpy188III TCNNGA 4 cut(s) 47, 422, 433, 512
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 3 cut(s) 118, 245, 321
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 3 cut(s) 157, 263, 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 231, 297
HpyF3I CTNAG 2 cut(s) 359, 464
HpySE526I ACGT 1 cut(s) 508
Hsp92I GRCGYC 2 cut(s) 176, 508
HspAI GCGC 1 cut(s) 176
KasI GGCGCC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 84, 347, 399
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 163, 200
MalI GATC 3 cut(s) 86, 349, 401
MboI GATC 3 cut(s) 84, 347, 399
MboII GAAGA 2 cut(s) 83, 109
MluCI AATT 4 cut(s) 20, 125, 375, 438
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 9 cut(s) 85, 105, 125, 189, 314, 382, 461, 469, 484
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 440
MspR9I CCNGG 4 cut(s) 29, 30, 206, 248
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 139, 231, 297
NarI GGCGCC 1 cut(s) 176
NciI CCSGG 3 cut(s) 29, 30, 248
NdeII GATC 3 cut(s) 84, 347, 399
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 163, 200
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 4 cut(s) 135, 395, 410, 454
PinAI ACCGGT 2 cut(s) 160, 446
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 1 cut(s) 487
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 163
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 105
PvuI CGATCG 1 cut(s) 402
Sau3AI GATC 3 cut(s) 84, 347, 399
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 4 cut(s) 29, 30, 206, 248
SfiI GGCCNNNNNGGCC 1 cut(s) 297
SfoI GGCGCC 1 cut(s) 177
SmaI CCCGGG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 4 cut(s) 20, 125, 375, 438
SsiI CCGC 1 cut(s) 186
SspDI GGCGCC 1 cut(s) 175
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 27, 28, 204, 246
TaiI ACGT 1 cut(s) 511
TaqI TCGA 5 cut(s) 236, 325, 398, 402, 452
TasI AATT 4 cut(s) 20, 125, 375, 438
TfiI GAWTC 4 cut(s) 135, 395, 410, 454
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 163, 200
Tsp45I GTSAC 2 cut(s) 163, 200
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 1 cut(s) 205
XapI RAATTY 2 cut(s) 20, 438
XmaI CCCGGG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 1 cut(s) 414
ZraI GACGTC 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.