Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008894

Physical Location & Seq

Genomic Coordinates Reverse (-)

23288044 .. 23290273

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTAATTTTTGGGATAAAAATAGAAACTTACCAGGGTAGGTTTCCAAAACCGGAAACCCACCCCCCCATTCTCTTTCTCTCTCCCCGACTCTCCCTTCCTCTTTCGGCCGATTCGCTCCCCCTCCGAGTTCTTCCTCTTCCGGCCGCCTCCGGACGTAATCCGGCCAACCCCAAGCTCGATTTCCTCCCCCGGTCACGTCTGTGGAAGCATCTTTGGACTATTTGGCCGGAAAAGCTCGGATCGAACGAATTTCCTCCCCGGTTGCAGTTTTGGATTTTGGCCGATTCCCGGCCATTCCGGCCACCTCCGGCCACCAGGGTTCTTGAAGCTTCGGGTCTTTCCTTCACCGGCTTGATTCGACCACTTCGAGGACGAGAGAAGTCTCCATACGAGGGAAATACCGAGCGACGTCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.03

Weight (kDa)

10.85

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008894)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326701 RchiOBHm_Chr1g0382121 RchiOBHm_Chr2g0112531 RchiOBHm_Chr2g0112991 RchiOBHm_Chr2g0114721 RchiOBHm_Chr2g0127921 RchiOBHm_Chr2g0127931 RchiOBHm_Chr2g0127941 RchiOBHm_Chr3g0495381 RchiOBHm_Chr4g0416991 RchiOBHm_Chr4g0429081 RchiOBHm_Chr4g0442281 RchiOBHm_Chr5g0078891 RchiOBHm_Chr6g0263681 RchiOBHm_Chr6g0266391 RchiOBHm_Chr6g0302751 RchiOBHm_Chr7g0187251 RchiOBHm_Chr7g0205541
rosa_multiflora	Rmu_sc0000026.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115450 Rroxscaffold_6G00398760
rosa_samantha	Rh6CG368200 Rh7AG027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	8 cut(s)	108, 144, 165, 227, 282, 293, 302, 312
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	291, 371, 395
AgsI	TTSAA	1 cut(s)	329
AjiI	CACGTC	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	33, 317
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AleI	CACNNNNGTG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	178, 238, 332
AluI	AGCT	3 cut(s)	178, 238, 332
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	8 cut(s)	108, 144, 165, 227, 282, 293, 302, 312
ApoI	RAATTY	1 cut(s)	251
AsuC2I	CCSGG	3 cut(s)	193, 262, 292
AsuHPI	GGTGA	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BciT130I	CCWGG	2 cut(s)	35, 319
BcnI	CCSGG	3 cut(s)	193, 262, 292
BcoDI	GTCTC	1 cut(s)	390
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	5 cut(s)	35, 193, 262, 292, 319
BmgBI	CACGTC	1 cut(s)	200
BmrFI	CCNGG	5 cut(s)	35, 193, 262, 292, 319
BmsI	GCATC	1 cut(s)	220
BpuMI	CCSGG	3 cut(s)	193, 262, 292
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	4 cut(s)	34, 191, 260, 318
BsaWI	WCCGGW	2 cut(s)	52, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 371, 395
Bse118I	RCCGGY	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	35, 319
BseDI	CCNNGG	4 cut(s)	34, 191, 260, 318
BseLI	CCNNNNNNNGG	3 cut(s)	291, 371, 395
BseX3I	CGGCCG	2 cut(s)	108, 144
Bsh1285I	CGRYCG	2 cut(s)	111, 147
BshFI	GGCC	8 cut(s)	110, 146, 167, 229, 284, 295, 304, 314
BsiEI	CGRYCG	2 cut(s)	111, 147
BslI	CCNNNNNNNGG	3 cut(s)	291, 371, 395
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	8 cut(s)	110, 146, 167, 229, 284, 295, 304, 314
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	8 cut(s)	110, 146, 167, 229, 284, 295, 304, 314
BspEI	TCCGGA	1 cut(s)	152
BspPI	GGATC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	4 cut(s)	34, 191, 260, 318
BssMI	GATC	1 cut(s)	242
BssNI	GRCGYC	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	35, 319
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	412
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	242
BstMCI	CGRYCG	2 cut(s)	111, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 301
BstNI	CCWGG	2 cut(s)	35, 319
BstSCI	CCNGG	5 cut(s)	33, 191, 260, 290, 317
BstZI	CGGCCG	2 cut(s)	108, 144
BsuRI	GGCC	8 cut(s)	110, 146, 167, 229, 284, 295, 304, 314
BtrI	CACGTC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	350
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
EaeI	YGGCCR	8 cut(s)	108, 144, 165, 227, 282, 293, 302, 312
EagI	CGGCCG	2 cut(s)	108, 144
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EclXI	CGGCCG	2 cut(s)	108, 144
Eco52I	CGGCCG	2 cut(s)	108, 144
EcoRII	CCWGG	2 cut(s)	33, 317
FaiI	YATR	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	8 cut(s)	110, 146, 167, 229, 284, 295, 304, 314
Hin1I	GRCGYC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	4 cut(s)	90, 113, 287, 358
HphI	GGTGA	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	128, 242
Hpy188III	TCNNGA	3 cut(s)	153, 326, 416
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	2 cut(s)	107, 355
HpyCH4IV	ACGT	3 cut(s)	157, 199, 412
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 301
HpySE526I	ACGT	3 cut(s)	157, 199, 412
Hsp92I	GRCGYC	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	123
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	3 cut(s)	157, 199, 412
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	2 cut(s)	125, 131
MluCI	AATT	2 cut(s)	6, 251
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	9 cut(s)	111, 134, 147, 160, 197, 267, 318, 365, 388
MroI	TCCGGA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	202
MspR9I	CCNGG	5 cut(s)	35, 193, 262, 292, 319
MvaI	CCWGG	2 cut(s)	35, 319
MwoI	GCNNNNNNNGC	2 cut(s)	235, 301
NciI	CCSGG	3 cut(s)	193, 262, 292
NdeII	GATC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 367
PfeI	GAWTC	3 cut(s)	113, 287, 358
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	33, 317
PspGI	CCWGG	2 cut(s)	33, 317
RseI	CAYNNNNRTG	1 cut(s)	202
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	5 cut(s)	35, 193, 262, 292, 319
SetI	ASST	8 cut(s)	44, 160, 180, 202, 240, 310, 334, 415
SfaNI	GCATC	1 cut(s)	220
SfiI	GGCCNNNNNGGCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	202
Sse9I	AATT	2 cut(s)	6, 251
SsiI	CCGC	1 cut(s)	147
StyD4I	CCNGG	5 cut(s)	33, 191, 260, 290, 317
TaiI	ACGT	3 cut(s)	160, 202, 415
TaqI	TCGA	4 cut(s)	180, 245, 361, 370
TasI	AATT	2 cut(s)	6, 251
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	113, 287, 358
TseFI	GTSAC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	251
ZraI	GACGTC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.