RchiOBHm_Chr3g0495381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008894
Physical Location & Seq
Forward (+)
44912468 .. 44914515
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45781

Sequence Viewer

Length: 240 bp
ATGTGGAATTTACTGTTCATGGTAAGTTGTATATATAAATGGAAATTTACTGTTGGTAGATTTCTATTTTCAGAAATCTACCCCAACCGGGTAAGTCTCCTTTTTCTCTCTCCCCGACCCTTTCTCCCCTCTCGGCCCGATCTCGTCCACCTCCGGTTGCTTCCTCCTCCGGCCGACCCAGGGCACAATCCGGCCACCCCCAAGCTCGGTTTCTTCCCCTTGTCACGTCTGTGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.31

Weight (kDa)

10.92

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 171, 192
AcsI RAATTY 2 cut(s) 7, 44
AfiI CCNNNNNNNGG 3 cut(s) 88, 180, 206
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AleI CACNNNNGTG 1 cut(s) 229
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 3 cut(s) 134, 171, 192
ApoI RAATTY 2 cut(s) 7, 44
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 89, 180
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 89, 180
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 178, 179
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 180, 206
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 178, 179
BseLI CCNNNNNNNGG 3 cut(s) 88, 180, 206
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 136, 173, 194
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 4 cut(s) 88, 154, 170, 191
BslI CCNNNNNNNGG 3 cut(s) 88, 180, 206
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 3 cut(s) 136, 173, 194
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 3 cut(s) 136, 173, 194
BssECI CCNNGG 2 cut(s) 178, 179
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 15, 52
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 174
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 87, 178
BstSLI GKGCMC 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 136, 173, 194
BtrI CACGTC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 136, 173, 194, 205
CviKI_1 RGCY 4 cut(s) 136, 173, 194, 205
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 171, 192
EagI CGGCCG 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 22
FaiI YATR 4 cut(s) 20, 32, 34, 36
FatI CATG 1 cut(s) 18
HaeIII GGCC 3 cut(s) 136, 173, 194
HapII CCGG 4 cut(s) 88, 154, 170, 191
Hin1II CATG 1 cut(s) 22
HpaII CCGG 4 cut(s) 88, 154, 170, 191
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 15, 52
HpyCH4IV ACGT 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 101, 165, 167, 183, 192, 204
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 2 cut(s) 7, 44
MnlI CCTC 5 cut(s) 139, 161, 174, 177, 228
MslI CAYNNNNRTG 1 cut(s) 229
MspI CCGG 4 cut(s) 88, 154, 170, 191
MspR9I CCNGG 2 cut(s) 89, 180
MvaI CCWGG 1 cut(s) 180
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 229
PasI CCCWGGG 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 229
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 89, 180
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 153, 207, 229, 239
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 2 cut(s) 7, 44
StyD4I CCNGG 2 cut(s) 87, 178
TaaI ACNGT 2 cut(s) 15, 52
TaiI ACGT 1 cut(s) 229
TasI AATT 2 cut(s) 7, 44
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 7
XapI RAATTY 2 cut(s) 7, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.