Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008894

Physical Location & Seq

Genomic Coordinates Reverse (-)

42808203 .. 42812455

Gene Structure 4253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAAAGTTACCCGGGTAGGTTTCCATTTTCGGAAACCACCCCGGCTCTTTCTCTCTCCTCTCCCCCGAGCTCTCTCTTCTCCGGTTCGGTCTCCTCCTCACCCCCTCCGATTTCCGGTGATTCCGGCCACCACAGGGCGTGCCACCGGTCACCAGAGGAGCGCCTCCTCCCTCCGAGCACCCCAGCAGCCTTGGTTTTCCACGATTTGGCCGGAAAACCACGGATCGAAGCCAAAACCACTCCGGCTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

8.89

Weight (kDa)

6.9

Isoelectric Point (pI)

92.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008894)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326701 RchiOBHm_Chr1g0382121 RchiOBHm_Chr2g0112531 RchiOBHm_Chr2g0112991 RchiOBHm_Chr2g0114721 RchiOBHm_Chr2g0127921 RchiOBHm_Chr2g0127931 RchiOBHm_Chr2g0127941 RchiOBHm_Chr3g0495381 RchiOBHm_Chr4g0416991 RchiOBHm_Chr4g0429081 RchiOBHm_Chr4g0442281 RchiOBHm_Chr5g0078891 RchiOBHm_Chr6g0263681 RchiOBHm_Chr6g0266391 RchiOBHm_Chr6g0302751 RchiOBHm_Chr7g0187251 RchiOBHm_Chr7g0205541
rosa_multiflora	Rmu_sc0000026.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115450 Rroxscaffold_6G00398760
rosa_samantha	Rh6CG368200 Rh7AG027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	127, 210
AfiI	CCNNNNNNNGG	3 cut(s)	116, 136, 208
AgeI	ACCGGT	1 cut(s)	147
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	2 cut(s)	74, 182
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	13, 67
AoxI	GGCC	2 cut(s)	127, 210
ApeKI	GCWGC	2 cut(s)	188, 248
AsiGI	ACCGGT	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	165
AsuC2I	CCSGG	3 cut(s)	14, 15, 44
AsuHPI	GGTGA	3 cut(s)	93, 131, 144
AvaI	CYCGRG	2 cut(s)	13, 67
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	74, 182
BbvI	GCAGC	2 cut(s)	200, 235
BcnI	CCSGG	3 cut(s)	14, 15, 44
BcoDI	GTCTC	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	2 cut(s)	189, 249
BlsI	GCNGC	2 cut(s)	190, 250
Bme1390I	CCNGG	3 cut(s)	14, 15, 44
BmeT110I	CYCGRG	2 cut(s)	13, 67
BmrFI	CCNGG	3 cut(s)	14, 15, 44
BpuMI	CCSGG	3 cut(s)	14, 15, 44
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	13, 42, 192, 221
BsaWI	WCCGGW	3 cut(s)	83, 116, 147
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 136, 208
Bse118I	RCCGGY	1 cut(s)	147
BseDI	CCNNGG	4 cut(s)	13, 42, 192, 221
BseLI	CCNNNNNNNGG	3 cut(s)	116, 136, 208
BseRI	GAGGAG	5 cut(s)	49, 85, 88, 158, 173
BseXI	GCAGC	2 cut(s)	200, 235
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	129, 212
BshTI	ACCGGT	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	74, 182
BsiHKCI	CYCGRG	2 cut(s)	13, 67
BsiSI	CCGG	8 cut(s)	14, 44, 84, 117, 126, 148, 213, 245
BslI	CCNNNNNNNGG	3 cut(s)	116, 136, 208
BsmAI	GTCTC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	129, 212
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	13, 67
Bsp1286I	GDGCHC	2 cut(s)	74, 182
Bsp143I	GATC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	129, 212
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	4 cut(s)	13, 42, 192, 221
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	3 cut(s)	12, 13, 42
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	200, 235
BsuRI	GGCC	2 cut(s)	129, 212
BtgI	CCRYGG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	147
Cfr9I	CCCGGG	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	147
CviJI	RGCY	7 cut(s)	47, 72, 129, 191, 212, 233, 248
CviKI_1	RGCY	7 cut(s)	47, 72, 129, 191, 212, 233, 248
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	2 cut(s)	127, 210
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	13, 67
Eco91I	GGTNACC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	72
EcoO65I	GGTNACC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	189, 249
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	189, 249
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	2 cut(s)	189, 249
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	129, 212
HapII	CCGG	8 cut(s)	14, 44, 84, 117, 126, 148, 213, 245
HhaI	GCGC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	8 cut(s)	14, 44, 84, 117, 126, 148, 213, 245
HphI	GGTGA	3 cut(s)	93, 131, 144
Hpy188I	TCNGA	3 cut(s)	34, 111, 177
HpyCH4V	TGCA	1 cut(s)	251
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	200, 235
MaeIII	GTNAC	2 cut(s)	8, 150
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	74, 182
MnlI	CCTC	8 cut(s)	70, 106, 109, 117, 151, 176, 179, 183
MspI	CCGG	8 cut(s)	14, 44, 84, 117, 126, 148, 213, 245
MspR9I	CCNGG	3 cut(s)	14, 15, 44
NciI	CCSGG	3 cut(s)	14, 15, 44
NdeII	GATC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	190, 250
Psp124BI	GAGCTC	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	74
SatI	GCNGC	2 cut(s)	189, 249
Sau3AI	GATC	1 cut(s)	225
ScrFI	CCNGG	3 cut(s)	14, 15, 44
SduI	GDGCHC	2 cut(s)	74, 182
SetI	ASST	2 cut(s)	23, 74
SfcI	CTRYAG	1 cut(s)	249
SmaI	CCCGGG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	12, 13, 42
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	188, 248
Tsp45I	GTSAC	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	238
TspMI	CCCGGG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.