RchiOBHm_Chr6g0263681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008894
Physical Location & Seq
Reverse (-)
18568295 .. 18570390
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23648

Sequence Viewer

Length: 444 bp
ATGGAAGTTGTAGAGGACGTTAAACCGAGCGCGTGCATATGTGGTTTCCATTTCCGGAAACCCACCCTTCCCCTTTCTCTCTCCTCCCCCCCCGAGCTCTCTCTTCTCCGGTTCGACCCTTTCCTTCCTCCCTCCGATTTCCGGCGATTCCGGCCACCAACCGGCGTGCCACCGGTCACCAGAGGAGCGCTTCCTCCCTCCGAGCACCCCAGCAGCCTTGGTTTTCCACGATTTGGCCGGAAAACCACGGATCGAAGCCTAAACCACTCCGGCTGCAGTTTGGGACTTTTGCCGATTCCCGGCGATTCCGGCCACCTCCGGTCCCCATTTCTTCGTCGAAGATTTGGGGTGAATTTGAGAAGTATTGGAGATAGAGATTTTCAGGTTTCGTTTAGTTTGCAGGCGTTATTAGTTGAGGTCGGGCGTACGTGGTTCGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

10.23

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 54
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 3 cut(s) 152, 235, 310
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 1 cut(s) 427
AfeI AGCGCT 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 141, 161, 233, 299
AgeI ACCGGT 1 cut(s) 172
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 2 cut(s) 99, 207
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 54
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 3 cut(s) 152, 235, 310
ApeKI GCWGC 2 cut(s) 213, 273
ApoI RAATTY 1 cut(s) 352
AsiGI ACCGGT 1 cut(s) 172
AspLEI GCGC 2 cut(s) 32, 190
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 169, 361
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 99, 207
BbvI GCAGC 2 cut(s) 225, 260
BcnI CCSGG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 2 cut(s) 214, 274
BlsI GCNGC 2 cut(s) 215, 275
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 217, 246
BsaWI WCCGGW 4 cut(s) 54, 108, 172, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 161, 233, 299
Bse118I RCCGGY 2 cut(s) 161, 172
BseAI TCCGGA 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 217, 246
BseLI CCNNNNNNNGG 4 cut(s) 141, 161, 233, 299
BseRI GAGGAG 2 cut(s) 73, 198
BseXI GCAGC 2 cut(s) 225, 260
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 154, 237, 312
BshTI ACCGGT 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 99, 207
BsiHKCI CYCGRG 1 cut(s) 92
BsiWI CGTACG 1 cut(s) 425
BslFI GGGAC 2 cut(s) 297, 307
BslI CCNNNNNNNGG 4 cut(s) 141, 161, 233, 299
BsmFI GGGAC 2 cut(s) 297, 307
BsnI GGCC 3 cut(s) 154, 237, 312
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 99, 207
Bsp13I TCCGGA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 3 cut(s) 154, 237, 312
BspEI TCCGGA 1 cut(s) 54
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 323
BspMAI CTGCAG 1 cut(s) 278
BspPI GGATC 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 161, 172
BssAI RCCGGY 2 cut(s) 161, 172
BssECI CCNNGG 2 cut(s) 217, 246
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 429
BstC8I GCNNGC 3 cut(s) 34, 167, 402
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 175
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 32, 190
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 151, 309
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 274
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 225, 260
BsuRI GGCC 3 cut(s) 154, 237, 312
BtgI CCRYGG 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 34, 167, 402
CfoI GCGC 2 cut(s) 32, 190
Cfr10I RCCGGY 2 cut(s) 161, 172
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 426
CspAI ACCGGT 1 cut(s) 172
CviJI RGCY 7 cut(s) 97, 154, 216, 237, 258, 273, 312
CviKI_1 RGCY 7 cut(s) 97, 154, 216, 237, 258, 273, 312
CviQI GTAC 1 cut(s) 426
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EaeI YGGCCR 3 cut(s) 152, 235, 310
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 321
Eco47III AGCGCT 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 217
FaiI YATR 3 cut(s) 38, 40, 442
FaqI GGGAC 2 cut(s) 297, 307
FauNDI CATATG 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 214, 274
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 214, 274
GlaI GCGC 2 cut(s) 31, 189
GluI GCNGC 2 cut(s) 214, 274
GsaI CCCAGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 3 cut(s) 154, 237, 312
HhaI GCGC 2 cut(s) 32, 190
Hin6I GCGC 2 cut(s) 30, 188
HinP1I GCGC 2 cut(s) 30, 188
HinfI GANTC 3 cut(s) 147, 295, 305
HphI GGTGA 2 cut(s) 169, 361
Hpy188I TCNGA 2 cut(s) 136, 202
Hpy188III TCNNGA 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 2 cut(s) 77, 134
HpyCH4IV ACGT 2 cut(s) 18, 428
HpyCH4V TGCA 3 cut(s) 36, 276, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 309
HpySE526I ACGT 2 cut(s) 18, 428
HspAI GCGC 2 cut(s) 30, 188
Kpn2I TCCGGA 1 cut(s) 54
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 2 cut(s) 225, 260
MaeII ACGT 2 cut(s) 18, 428
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 95, 323, 351
MhlI GDGCHC 2 cut(s) 99, 207
MluCI AATT 1 cut(s) 352
MroI TCCGGA 1 cut(s) 54
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 151, 309
NciI CCSGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 38
NdeII GATC 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 175
PfeI GAWTC 3 cut(s) 147, 295, 305
Pfl23II CGTACG 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 233
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 2 cut(s) 215, 275
Ppu21I YACGTR 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 99
PspEI GGTNACC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 209
PspLI CGTACG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 278
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 214, 274
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 2 cut(s) 99, 207
SetI ASST 6 cut(s) 21, 99, 318, 387, 420, 431
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 321
Sse9I AATT 1 cut(s) 352
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 2 cut(s) 21, 431
TaqI TCGA 4 cut(s) 114, 253, 337, 435
TasI AATT 1 cut(s) 352
TfiI GAWTC 3 cut(s) 147, 295, 305
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 213, 273
Tsp45I GTSAC 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 321
XapI RAATTY 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.