Rh6CG368200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008894
Physical Location & Seq
Forward (+)
55578101 .. 55578388
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG368200.1

Sequence Viewer

Length: 288 bp
ATGTTTCGGTGGGCAAAGAAGTCGGCGTTTGTGGCTGGGTTTTGGAGATTGTCTTGTGCTGTGGGTGGACCAGATCTCGGAGGACGTCGCGGGTCTTTCGGCGGTGGAGGAAGACCAGTGGATCAGAGAGGTCGCTGCGATCGCGGTGTGCCTATCAGGTCCATGCGAGGTCGGATTCCCGTATTGAGTGCAGGGGTTCGCCTGTTCTCCAGATTTCGACTTGGAGGGGCAGCAAGTTGGCTAACGTTGTTCCTCGTTGGTGGATCTGGACGTGCAGGTGCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.1

Weight (kDa)

12.0

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 266
AatII GACGTC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 266
AccII CGCG 2 cut(s) 90, 144
AciI CCGC 3 cut(s) 90, 102, 144
AclI AACGTT 1 cut(s) 245
AclWI GGATC 2 cut(s) 129, 271
AcyI GRCGYC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 77
AjiI CACGTC 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 2 cut(s) 129, 271
ApeKI GCWGC 2 cut(s) 135, 230
AsiSI GCGATCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 68, 159
AvaII GGWCC 2 cut(s) 68, 159
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 122, 242
BcgI CGANNNNNNTGC 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 136, 231
BlsI GCNGC 2 cut(s) 137, 232
Bme18I GGWCC 2 cut(s) 68, 159
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 68, 159
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 122, 242
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 2 cut(s) 90, 144
Bsh1285I CGRYCG 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 73, 121, 139, 263
BspACI CCGC 3 cut(s) 90, 102, 144
BspFNI CGCG 2 cut(s) 90, 144
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 129, 271
BsrI ACTGG 1 cut(s) 116
BssMI GATC 4 cut(s) 73, 121, 139, 263
BssNI GRCGYC 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 85
BstFNI CGCG 2 cut(s) 90, 144
BstKTI GATC 4 cut(s) 76, 124, 142, 266
BstMBI GATC 4 cut(s) 73, 121, 139, 263
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 32, 141
BstUI CGCG 2 cut(s) 90, 144
BstV1I GCAGC 2 cut(s) 122, 242
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 73, 263
BstYI RGATCY 2 cut(s) 73, 263
BtrI CACGTC 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 68, 159
CviAII CATG 1 cut(s) 163
CviJI RGCY 2 cut(s) 35, 241
CviKI_1 RGCY 2 cut(s) 35, 241
DpnI GATC 4 cut(s) 75, 123, 141, 265
DpnII GATC 4 cut(s) 73, 121, 139, 263
Eco47I GGWCC 2 cut(s) 68, 159
FaeI CATG 1 cut(s) 166
FaiI YATR 1 cut(s) 164
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 136, 231
Fsp4HI GCNGC 2 cut(s) 136, 231
GluI GCNGC 2 cut(s) 136, 231
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 1 cut(s) 166
HinfI GANTC 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 80, 126, 174
Hpy188III TCNNGA 2 cut(s) 210, 267
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 90
HpyCH4IV ACGT 3 cut(s) 85, 245, 271
HpyCH4V TGCA 2 cut(s) 191, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 141
HpySE526I ACGT 3 cut(s) 85, 245, 271
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 4 cut(s) 73, 121, 139, 263
LpnPI CCDG 9 cut(s) 21, 84, 129, 142, 177, 215, 223, 252, 261
Lsp1109I GCAGC 2 cut(s) 122, 242
MaeII ACGT 3 cut(s) 85, 245, 271
MalI GATC 4 cut(s) 75, 123, 141, 265
MboI GATC 4 cut(s) 73, 121, 139, 263
MboII GAAGA 1 cut(s) 123
MflI RGATCY 2 cut(s) 73, 263
MhlI GDGCHC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 6 cut(s) 74, 101, 122, 161, 218, 263
MvnI CGCG 2 cut(s) 90, 144
MwoI GCNNNNNNNGC 2 cut(s) 32, 141
NdeII GATC 4 cut(s) 73, 121, 139, 263
NlaIII CATG 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 137, 232
Ple19I CGATCG 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 68, 159
PsuI RGATCY 2 cut(s) 73, 263
PvuI CGATCG 1 cut(s) 142
RgaI GCGATCGC 1 cut(s) 142
SatI GCNGC 2 cut(s) 136, 231
Sau3AI GATC 4 cut(s) 73, 121, 139, 263
Sau96I GGNCC 2 cut(s) 68, 159
SduI GDGCHC 1 cut(s) 283
SetI ASST 7 cut(s) 88, 133, 161, 172, 248, 274, 280
SfaAI GCGATCGC 1 cut(s) 142
SgfI GCGATCGC 1 cut(s) 142
SinI GGWCC 2 cut(s) 68, 159
SsiI CCGC 3 cut(s) 90, 102, 144
TaiI ACGT 3 cut(s) 88, 248, 274
TaqI TCGA 1 cut(s) 217
TfiI GAWTC 1 cut(s) 175
TscAI CASTG 1 cut(s) 123
TseI GCWGC 2 cut(s) 135, 230
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 68, 159
ZraI GACGTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.