RchiOBHm_Chr7g0187251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008894
Physical Location & Seq
Forward (+)
7024623 .. 7026819
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16713

Sequence Viewer

Length: 408 bp
ATGGCCGAAATTTTACCCGGGTGGGTTTCCATTTCCGGAAACCACCCCAACTCTTTCTCTCTCCTCTCCCCCGATCTCTCTTCCTCCGGTTCGCCCCATTTCCTTCCTCCTCCGATTGCCGGCGATTCCGGCCACCCCAAGGCGTGCCACCGGTCATCCCAGGATCGCCTCCTCCCTCCGAGCACCCCTGCATCCTTGGTTTTCCACGATTTGGCCGGAAAACCACGGATCGACGAAGAACTCCTCCGGCTGCAGTTTGCCGATTCCCGGCGATTCCGGCCACCACCGGCCCCCATCTCTTCGTCGAAGGACGAGAGGAGTCTCCATACGAGGAGAATCACGAGCGACGTCAGGATTGACCGCATTTTATTGCAGTACTGTTGCTCGGTGTACGAGAGTGAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

7.01

Isoelectric Point (pI)

79.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 1 cut(s) 361
AclWI GGATC 2 cut(s) 171, 236
AcoI YGGCCR 4 cut(s) 3, 130, 213, 278
AcsI RAATTY 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 2 cut(s) 377, 392
AfiI CCNNNNNNNGG 4 cut(s) 119, 139, 211, 267
AgeI ACCGGT 1 cut(s) 150
AjnI CCWGG 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 2 cut(s) 171, 236
Ama87I CYCGRG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 35
AoxI GGCC 5 cut(s) 3, 130, 213, 278, 288
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 3 cut(s) 18, 19, 268
AvaI CYCGRG 1 cut(s) 17
BauI CACGAG 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 3 cut(s) 18, 19, 268
BcoDI GTCTC 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 4 cut(s) 18, 19, 161, 268
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 4 cut(s) 18, 19, 161, 268
BmsI GCATC 1 cut(s) 200
BpuMI CCSGG 3 cut(s) 18, 19, 268
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 5 cut(s) 17, 138, 159, 195, 224
BsaWI WCCGGW 3 cut(s) 35, 86, 150
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 139, 211, 267
Bse118I RCCGGY 3 cut(s) 119, 150, 286
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 5 cut(s) 17, 138, 159, 195, 224
BseGI GGATG 2 cut(s) 155, 191
BseLI CCNNNNNNNGG 4 cut(s) 119, 139, 211, 267
BseRI GAGGAG 6 cut(s) 53, 99, 161, 233, 331, 346
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 5 cut(s) 5, 132, 215, 280, 290
BshTI ACCGGT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 17
BslI CCNNNNNNNGG 4 cut(s) 119, 139, 211, 267
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 5 cut(s) 5, 132, 215, 280, 290
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 3 cut(s) 73, 163, 228
BspACI CCGC 1 cut(s) 361
BspANI GGCC 5 cut(s) 5, 132, 215, 280, 290
BspEI TCCGGA 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 291
BspMAI CTGCAG 1 cut(s) 255
BspPI GGATC 2 cut(s) 171, 236
BsrFI RCCGGY 3 cut(s) 119, 150, 286
BssAI RCCGGY 3 cut(s) 119, 150, 286
BssECI CCNNGG 5 cut(s) 17, 138, 159, 195, 224
BssMI GATC 3 cut(s) 73, 163, 228
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 138, 195
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 2 cut(s) 85, 304
BstACI GRCGYC 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 121, 145
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 155, 191
BstKTI GATC 3 cut(s) 76, 166, 231
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 3 cut(s) 73, 163, 228
BstMWI GCNNNNNNNGC 2 cut(s) 129, 277
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 4 cut(s) 16, 17, 159, 266
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 237
BsuRI GGCC 5 cut(s) 5, 132, 215, 280, 290
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 155, 191
Cac8I GCNNGC 2 cut(s) 121, 145
Cfr10I RCCGGY 3 cut(s) 119, 150, 286
Cfr13I GGNCC 1 cut(s) 289
Cfr9I CCCGGG 1 cut(s) 17
Csp6I GTAC 2 cut(s) 376, 391
CspAI ACCGGT 1 cut(s) 150
CviJI RGCY 7 cut(s) 5, 132, 215, 250, 280, 290, 403
CviKI_1 RGCY 7 cut(s) 5, 132, 215, 250, 280, 290, 403
CviQI GTAC 2 cut(s) 376, 391
DpnI GATC 3 cut(s) 75, 165, 230
DpnII GATC 3 cut(s) 73, 163, 228
EaeI YGGCCR 4 cut(s) 3, 130, 213, 278
Eam1104I CTCTTC 2 cut(s) 85, 304
EarI CTCTTC 2 cut(s) 85, 304
Eco130I CCWWGG 2 cut(s) 138, 195
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 138, 195
ErhI CCWWGG 2 cut(s) 138, 195
FaiI YATR 2 cut(s) 327, 406
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 2 cut(s) 142, 178
Fsp4HI GCNGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 5 cut(s) 5, 132, 215, 280, 290
Hin1I GRCGYC 1 cut(s) 348
HinfI GANTC 5 cut(s) 125, 263, 273, 319, 336
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 114, 180
Hpy188III TCNNGA 3 cut(s) 36, 340, 352
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 3 cut(s) 236, 307, 350
HpyAV CCTTC 2 cut(s) 113, 301
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 191, 253, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 277
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 348
Kpn2I TCCGGA 1 cut(s) 35
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 73, 163, 228
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 200
MaeII ACGT 1 cut(s) 348
MalI GATC 3 cut(s) 75, 165, 230
MboI GATC 3 cut(s) 73, 163, 228
MboII GAAGA 3 cut(s) 72, 248, 291
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 328
MroI TCCGGA 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 119
MspR9I CCNGG 4 cut(s) 18, 19, 161, 268
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 129, 277
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 3 cut(s) 18, 19, 268
NdeII GATC 3 cut(s) 73, 163, 228
NgoMIV GCCGGC 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 4 cut(s) 125, 263, 273, 336
PflMI CCANNNNNTGG 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 289
PstI CTGCAG 1 cut(s) 255
RsaI GTAC 2 cut(s) 377, 392
RsaNI GTAC 2 cut(s) 376, 391
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 3 cut(s) 73, 163, 228
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 4 cut(s) 18, 19, 161, 268
SduI GDGCHC 1 cut(s) 185
SetI ASST 1 cut(s) 351
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 251
SmaI CCCGGG 1 cut(s) 19
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 361
StyD4I CCNGG 4 cut(s) 16, 17, 159, 266
StyI CCWWGG 2 cut(s) 138, 195
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 231, 305
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 4 cut(s) 125, 263, 273, 336
TseI GCWGC 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 241
TspMI CCCGGG 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 211
XapI RAATTY 1 cut(s) 9
XmaI CCCGGG 1 cut(s) 17
ZraI GACGTC 1 cut(s) 349
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.