Rroxscaffold_6G00398760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008894
Physical Location & Seq
Forward (+)
20636682 .. 20650634
13953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398760.1

Sequence Viewer

Length: 441 bp
ATGGAAAGTTACCCCGGGGTAGGTTTCCATTTCCGAAACCCCCCTTCCCCTTTCTCTCTCCTCCCCCCGAGCTCTCCTCCTCTCCCGGTTCGGCCTCTCCCCTTTCCCCTCCGATTTCTCCCTCGTCGGCCACCTCCGGACGCAATCGGCCACCCCCGAAGCTCGGCTCCCTCCCTCGAACACGTACGTGGAGGCATTTTGGGACGATTCGGCCGGAAAAGCTCGGATCGAACGAAAAACTCAACCGGGTGCAGTTTTGAACTTTCACCGATTTCCGGCCATTCGGCCGCCTCCGCCGCCACCTTCCCATCGAAGGTTCGGTTTTTCATGGTGATCAATTCCCCTAAGGTAGTTTGCTCCAATTTACATTGTAGAAACCGAATTAACGATTTGTTCATTCTAGGGTTCTTGGAGCTTCGGTGCAAACCTTCACCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

11.08

Isoelectric Point (pI)

69.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 3 cut(s) 288, 294, 297
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 5 cut(s) 128, 148, 211, 277, 285
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 4 cut(s) 20, 163, 275, 313
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 260
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 4 cut(s) 72, 162, 222, 415
AluI AGCT 4 cut(s) 72, 162, 222, 415
Alw21I GWGCWC 1 cut(s) 74
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 2 cut(s) 14, 67
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 6 cut(s) 92, 128, 148, 211, 277, 285
AsuC2I CCSGG 4 cut(s) 15, 16, 86, 247
AsuHPI GGTGA 3 cut(s) 258, 343, 423
AvaI CYCGRG 2 cut(s) 14, 67
AxyI CCTNAGG 1 cut(s) 345
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BccI CCATC 1 cut(s) 316
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 4 cut(s) 15, 16, 86, 247
BfaI CTAG 1 cut(s) 401
BisI GCNGC 2 cut(s) 288, 297
BlsI GCNGC 2 cut(s) 289, 298
Bme1390I CCNGG 4 cut(s) 15, 16, 86, 247
BmeT110I CYCGRG 2 cut(s) 14, 67
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 4 cut(s) 15, 16, 86, 247
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpuMI CCSGG 4 cut(s) 15, 16, 86, 247
BsaAI YACGTR 2 cut(s) 184, 188
BsaJI CCNNGG 3 cut(s) 13, 14, 15
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 163, 275, 313
Bse118I RCCGGY 1 cut(s) 433
Bse21I CCTNAGG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 13, 14, 15
BseLI CCNNNNNNNGG 4 cut(s) 20, 163, 275, 313
BseRI GAGGAG 3 cut(s) 50, 66, 69
BseX3I CGGCCG 2 cut(s) 211, 285
BsgI GTGCAG 1 cut(s) 271
Bsh1285I CGRYCG 2 cut(s) 214, 288
BshFI GGCC 6 cut(s) 94, 130, 150, 213, 279, 287
BsiEI CGRYCG 2 cut(s) 214, 288
BsiHKAI GWGCWC 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 14, 67
BsiSI CCGG 7 cut(s) 15, 86, 137, 214, 246, 276, 434
BsiWI CGTACG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 20, 163, 275, 313
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 6 cut(s) 94, 130, 150, 213, 279, 287
BsoBI CYCGRG 2 cut(s) 14, 67
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 226, 333
BspACI CCGC 3 cut(s) 288, 294, 297
BspANI GGCC 6 cut(s) 94, 130, 150, 213, 279, 287
BspEI TCCGGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 13, 14, 15
BssMI GATC 2 cut(s) 226, 333
BstBAI YACGTR 2 cut(s) 184, 188
BstDEI CTNAG 1 cut(s) 345
BstKTI GATC 2 cut(s) 229, 336
BstMBI GATC 2 cut(s) 226, 333
BstMCI CGRYCG 2 cut(s) 214, 288
BstMWI GCNNNNNNNGC 3 cut(s) 219, 293, 296
BstSCI CCNGG 4 cut(s) 13, 14, 84, 245
BstZI CGGCCG 2 cut(s) 211, 285
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 6 cut(s) 94, 130, 150, 213, 279, 287
Cfr10I RCCGGY 1 cut(s) 433
Cfr9I CCCGGG 1 cut(s) 14
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 328
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 228, 335
DpnII GATC 2 cut(s) 226, 333
EaeI YGGCCR 5 cut(s) 128, 148, 211, 277, 285
EagI CGGCCG 2 cut(s) 211, 285
EciI GGCGGA 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 72
EclXI CGGCCG 2 cut(s) 211, 285
Eco24I GRGCYC 1 cut(s) 74
Eco52I CGGCCG 2 cut(s) 211, 285
Eco53kI GAGCTC 1 cut(s) 72
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 2 cut(s) 14, 67
EcoICRI GAGCTC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 1 cut(s) 331
FaiI YATR 1 cut(s) 329
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 327
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 288, 297
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 288, 297
FspBI CTAG 1 cut(s) 401
GluI GCNGC 2 cut(s) 288, 297
HaeIII GGCC 6 cut(s) 94, 130, 150, 213, 279, 287
HapII CCGG 7 cut(s) 15, 86, 137, 214, 246, 276, 434
HgaI GACGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 331
HinfI GANTC 1 cut(s) 207
HpaII CCGG 7 cut(s) 15, 86, 137, 214, 246, 276, 434
HphI GGTGA 3 cut(s) 258, 343, 423
Hpy188I TCNGA 3 cut(s) 35, 113, 226
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 4 cut(s) 54, 307, 313, 438
HpyCH4IV ACGT 2 cut(s) 183, 187
HpyCH4V TGCA 2 cut(s) 252, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 293, 296
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 183, 187
Hsp92II CATG 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 2 cut(s) 226, 333
LmnI GCTCC 3 cut(s) 172, 362, 412
LpnPI CCDG 6 cut(s) 28, 99, 150, 227, 259, 289
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 183, 187
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 228, 335
MboI GATC 2 cut(s) 226, 333
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 337, 361, 381
MroI TCCGGA 1 cut(s) 136
MseI TTAA 2 cut(s) 384, 439
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 7 cut(s) 15, 86, 137, 214, 246, 276, 434
MspR9I CCNGG 4 cut(s) 15, 16, 86, 247
MwoI GCNNNNNNNGC 3 cut(s) 219, 293, 296
NciI CCSGG 4 cut(s) 15, 16, 86, 247
NdeII GATC 2 cut(s) 226, 333
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 143
OliI CACNNNNGTG 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfeI GAWTC 1 cut(s) 207
Pfl23II CGTACG 1 cut(s) 184
PkrI GCNGC 2 cut(s) 289, 298
Ppu21I YACGTR 2 cut(s) 184, 188
Psp124BI GAGCTC 1 cut(s) 74
PspLI CGTACG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 168
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 384, 439
SatI GCNGC 2 cut(s) 288, 297
Sau3AI GATC 2 cut(s) 226, 333
ScrFI CCNGG 4 cut(s) 15, 16, 86, 247
SduI GDGCHC 1 cut(s) 74
SmaI CCCGGG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 337, 361, 381
SsiI CCGC 3 cut(s) 288, 294, 297
SspMI CTAG 1 cut(s) 401
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 4 cut(s) 13, 14, 84, 245
TaiI ACGT 2 cut(s) 186, 190
TaqI TCGA 3 cut(s) 177, 229, 311
TasI AATT 3 cut(s) 337, 361, 381
TauI GCSGC 2 cut(s) 290, 299
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 2 cut(s) 384, 439
Tru9I TTAA 2 cut(s) 384, 439
TspDTI ATGAA 2 cut(s) 316, 385
TspMI CCCGGG 1 cut(s) 14
XmaI CCCGGG 1 cut(s) 14
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.