Rh7AG027600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008894
Physical Location & Seq
Forward (+)
1817891 .. 1818175
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG027600.1

Sequence Viewer

Length: 285 bp
ATGGTGGGCATCATTGACAGGTTTAGCAGAGAGCGGCAGCCTAGGAACCTGAGGTTGCACGCTAGTATAGCGGCGACATGGCTTCTTGTCACAAGTAGAGATGACTTCGGGGCAGGCTGTGTTGGCCGGCCGGTCGAATTCCAGATAGAGGTGCCTGGACGCTGGTCTTTTGGTGGTGGAGGAAGACCAGTGGATCAAAGAGGTCGACGCGATCGTGGTGTGCTTATCGGGTCCGTGCGAGGTCGGATTCCGGTATTGAGTGCAGGGGTTCATCTCTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.35

Weight (kDa)

11.7

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 205
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 34, 71
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 2 cut(s) 124, 128
AcsI RAATTY 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 148
AjnI CCWGG 1 cut(s) 154
AlwI GGATC 1 cut(s) 201
AoxI GGCC 2 cut(s) 124, 128
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 137
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 231
AvaII GGWCC 1 cut(s) 231
AvrII CCTAGG 1 cut(s) 41
AxyI CCTNAGG 1 cut(s) 50
BanI GGYRCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 156
BfaI CTAG 2 cut(s) 42, 63
BisI GCNGC 3 cut(s) 35, 38, 72
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 3 cut(s) 36, 39, 73
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 3 cut(s) 47, 153, 232
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 2 cut(s) 126, 130
Bse1I ACTGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 188
BseX3I CGGCCG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 3 cut(s) 131, 135, 214
BshFI GGCC 2 cut(s) 126, 130
BshNI GGYRCC 1 cut(s) 151
BsiEI CGRYCG 3 cut(s) 131, 135, 214
BsiSI CCGG 3 cut(s) 127, 131, 251
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 2 cut(s) 126, 130
Bsp143I GATC 2 cut(s) 193, 211
BspACI CCGC 2 cut(s) 34, 71
BspANI GGCC 2 cut(s) 126, 130
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 47, 153, 232
BspPI GGATC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 34
BsrFI RCCGGY 2 cut(s) 126, 130
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 2 cut(s) 126, 130
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 193, 211
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 60, 115, 128
BstDEI CTNAG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 210
BstKTI GATC 2 cut(s) 196, 214
BstMBI GATC 2 cut(s) 193, 211
BstMCI CGRYCG 3 cut(s) 131, 135, 214
BstMWI GCNNNNNNNGC 2 cut(s) 68, 123
BstNI CCWGG 1 cut(s) 156
BstPAI GACNNNNGTC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 50
BsuRI GGCC 2 cut(s) 126, 130
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 60, 115, 128
Cfr10I RCCGGY 2 cut(s) 126, 130
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 2 cut(s) 168, 216
CviAII CATG 1 cut(s) 78
CviJI RGCY 5 cut(s) 40, 82, 117, 126, 130
CviKI_1 RGCY 5 cut(s) 40, 82, 117, 126, 130
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 195, 213
DpnII GATC 2 cut(s) 193, 211
EaeI YGGCCR 2 cut(s) 124, 128
EagI CGGCCG 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EclXI CGGCCG 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 81
FaiI YATR 2 cut(s) 68, 79
FatI CATG 1 cut(s) 77
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 35, 38, 72
FseI GGCCGGCC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 35, 38, 72
FspBI CTAG 2 cut(s) 42, 63
GluI GCNGC 3 cut(s) 35, 38, 72
HaeIII GGCC 2 cut(s) 126, 130
HapII CCGG 3 cut(s) 127, 131, 251
HgaI GACGC 2 cut(s) 168, 216
Hin1II CATG 1 cut(s) 81
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
HinfI GANTC 1 cut(s) 247
HpaII CCGG 3 cut(s) 127, 131, 251
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 142, 282
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 58, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 123
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 81
KroI GCCGGC 1 cut(s) 126
KroNI GCCGGC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 193, 211
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 18
MaeI CTAG 2 cut(s) 42, 63
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 195, 213
MbiI CCGCTC 1 cut(s) 34
MboI GATC 2 cut(s) 193, 211
MboII GAAGA 2 cut(s) 195, 268
MluCI AATT 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 5 cut(s) 45, 142, 173, 194, 233
MroNI GCCGGC 1 cut(s) 126
MspI CCGG 3 cut(s) 127, 131, 251
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 68, 123
NaeI GCCGGC 1 cut(s) 128
NdeII GATC 2 cut(s) 193, 211
NgoMIV GCCGGC 1 cut(s) 126
NlaIII CATG 1 cut(s) 81
NlaIV GGNNCC 3 cut(s) 47, 153, 232
NmuCI GTSAC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 36, 39, 73
Ple19I CGATCG 1 cut(s) 214
PshAI GACNNNNGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 47, 153, 232
PspPI GGNCC 1 cut(s) 231
PvuI CGATCG 1 cut(s) 214
RigI GGCCGGCC 1 cut(s) 130
SalI GTCGAC 1 cut(s) 204
SatI GCNGC 3 cut(s) 35, 38, 72
Sau3AI GATC 2 cut(s) 193, 211
Sau96I GGNCC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 156
SetI ASST 6 cut(s) 23, 51, 56, 153, 205, 244
SfaNI GCATC 1 cut(s) 18
SinI GGWCC 1 cut(s) 231
Sse9I AATT 1 cut(s) 137
SsiI CCGC 2 cut(s) 34, 71
SspMI CTAG 2 cut(s) 42, 63
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 2 cut(s) 135, 205
TasI AATT 1 cut(s) 137
TauI GCSGC 2 cut(s) 37, 74
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 1 cut(s) 137
XmaJI CCTAGG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 205
XspI CTAG 2 cut(s) 42, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.