RchiOBHm_Chr6g0302751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008894
Physical Location & Seq
Forward (+)
62766267 .. 62768489
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27196

Sequence Viewer

Length: 270 bp
ATGCGAGAGTTATGGCCGAAATTTTACCCGGGTGGGTTTCCATTTCCGGAAACCACCCCAACTCTTTCTCTCTCCTCTCCCCCGATCTCTCTTCCTCCGGTTCGGCCCTTCTCCCTCTTCCATCAATTCCGGCGATTCCGGCCACCATCCGGCGTGCAACCGGTCACCACAGGGGCGCCTCAACCCGCTTGTGATACCAGTGACCTGGGTTTGGGGAGTTTTGGCCGGAAAAGCTCGATTTCACGCCGGGAAGGAGATCATTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.83

Weight (kDa)

10.25

Isoelectric Point (pI)

83.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 1 cut(s) 186
AcoI YGGCCR 3 cut(s) 14, 140, 223
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 149, 211
AgeI ACCGGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 4 cut(s) 14, 104, 140, 223
ApoI RAATTY 1 cut(s) 20
AsiGI ACCGGT 1 cut(s) 160
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 105
AsuC2I CCSGG 3 cut(s) 29, 30, 248
AsuHPI GGTGA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 175
BccI CCATC 2 cut(s) 129, 154
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 3 cut(s) 29, 30, 248
BfoI RGCGCY 1 cut(s) 179
Bme1390I CCNGG 4 cut(s) 29, 30, 206, 248
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 4 cut(s) 29, 30, 206, 248
BpuMI CCSGG 3 cut(s) 29, 30, 248
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 28, 205
BsaWI WCCGGW 3 cut(s) 46, 97, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 211
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 28, 205
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 149, 211
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 64
BshFI GGCC 4 cut(s) 16, 106, 142, 225
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 9 cut(s) 29, 47, 98, 130, 139, 150, 161, 226, 247
BslI CCNNNNNNNGG 2 cut(s) 149, 211
BsnI GGCC 4 cut(s) 16, 106, 142, 225
BsoBI CYCGRG 1 cut(s) 28
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 84, 256
BspACI CCGC 1 cut(s) 186
BspANI GGCC 4 cut(s) 16, 106, 142, 225
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 28, 205
BssMI GATC 2 cut(s) 84, 256
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 96, 122
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 155
BstEII GGTNACC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 87, 259
BstMBI GATC 2 cut(s) 84, 256
BstMWI GCNNNNNNNGC 2 cut(s) 139, 231
BstNI CCWGG 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 4 cut(s) 27, 28, 204, 246
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 4 cut(s) 16, 106, 142, 225
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 105
Cfr9I CCCGGG 1 cut(s) 28
CspAI ACCGGT 1 cut(s) 160
CviJI RGCY 5 cut(s) 16, 106, 142, 225, 234
CviKI_1 RGCY 5 cut(s) 16, 106, 142, 225, 234
DinI GGCGCC 1 cut(s) 177
DpnI GATC 2 cut(s) 86, 258
DpnII GATC 2 cut(s) 84, 256
EaeI YGGCCR 3 cut(s) 14, 140, 223
Eam1104I CTCTTC 2 cut(s) 96, 122
EarI CTCTTC 2 cut(s) 96, 122
Eco88I CYCGRG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
FaiI YATR 1 cut(s) 13
FauI CCCGC 1 cut(s) 193
FokI GGATG 1 cut(s) 133
GlaI GCGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 4 cut(s) 16, 106, 142, 225
HapII CCGG 9 cut(s) 29, 47, 98, 130, 139, 150, 161, 226, 247
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 135
HpaII CCGG 9 cut(s) 29, 47, 98, 130, 139, 150, 161, 226, 247
HphI GGTGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 118, 245
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 231
Hsp92I GRCGYC 1 cut(s) 176
HspAI GCGC 1 cut(s) 176
KasI GGCGCC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 84, 256
MaeIII GTNAC 2 cut(s) 163, 200
MalI GATC 2 cut(s) 86, 258
MboI GATC 2 cut(s) 84, 256
MboII GAAGA 2 cut(s) 83, 109
MluCI AATT 2 cut(s) 20, 125
Mly113I GGCGCC 1 cut(s) 176
MnlI CCTC 4 cut(s) 85, 105, 125, 189
MroI TCCGGA 1 cut(s) 46
MspI CCGG 9 cut(s) 29, 47, 98, 130, 139, 150, 161, 226, 247
MspR9I CCNGG 4 cut(s) 29, 30, 206, 248
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 139, 231
NarI GGCGCC 1 cut(s) 176
NciI CCSGG 3 cut(s) 29, 30, 248
NdeII GATC 2 cut(s) 84, 256
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 163, 200
PfeI GAWTC 1 cut(s) 135
PinAI ACCGGT 1 cut(s) 160
PluTI GGCGCC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 163
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 84, 256
Sau96I GGNCC 1 cut(s) 105
ScrFI CCNGG 4 cut(s) 29, 30, 206, 248
SetI ASST 2 cut(s) 207, 236
SfoI GGCGCC 1 cut(s) 177
SmaI CCCGGG 1 cut(s) 30
Sse9I AATT 2 cut(s) 20, 125
SsiI CCGC 1 cut(s) 186
SspDI GGCGCC 1 cut(s) 175
StyD4I CCNGG 4 cut(s) 27, 28, 204, 246
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 20, 125
TfiI GAWTC 1 cut(s) 135
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 163, 200
Tsp45I GTSAC 2 cut(s) 163, 200
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 20
XmaI CCCGGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.