RchiOBHm_Chr2g0112991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008894
Physical Location & Seq
Reverse (-)
25121764 .. 25123116
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48638

Sequence Viewer

Length: 159 bp
ATGGGACATCCGGCCGTCGGATTTCCCTCATTTGGGGTGAATTTGAGAAGTATTGGAGATAGAGATTTTCAGGTTTCGTTTAGGTTCGTAATTATTTTATCGAATTGCCGTTTACGGAAATTTAATTGTGTACAGGGCAATGTTGCGAGCTACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.78

Weight (kDa)

10.08

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 2 cut(s) 40, 119
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 17, 32, 33
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
AoxI GGCC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 40, 119
AsuHPI GGTGA 1 cut(s) 49
BceAI ACGGC 1 cut(s) 93
BfaI CTAG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 32, 33
Bse3DI GCAATG 1 cut(s) 145
BseGI GGATG 1 cut(s) 7
BseLI CCNNNNNNNGG 3 cut(s) 17, 32, 33
BseMI GCAATG 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 17, 32, 33
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 130
BspANI GGCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 15
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 131
CviJI RGCY 3 cut(s) 14, 150, 156
CviKI_1 RGCY 3 cut(s) 14, 150, 156
CviQI GTAC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 12
FaqI GGGAC 1 cut(s) 18
FspBI CTAG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 11
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 113, 131
Hpy188I TCNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 113, 131
Hpy99I CGWCG 1 cut(s) 20
LpnPI CCDG 3 cut(s) 24, 56, 119
MaeI CTAG 1 cut(s) 157
MluCI AATT 5 cut(s) 40, 90, 103, 119, 124
MnlI CCTC 1 cut(s) 37
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 11
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 123
SetI ASST 3 cut(s) 75, 86, 152
SgeI CNNG 3 cut(s) 23, 83, 146
Sse9I AATT 5 cut(s) 40, 90, 103, 119, 124
SspMI CTAG 1 cut(s) 157
TaqI TCGA 1 cut(s) 101
TasI AATT 5 cut(s) 40, 90, 103, 119, 124
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 130
XapI RAATTY 2 cut(s) 40, 119
XspI CTAG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.