RchiOBHm_Chr2g0122091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007550
Physical Location & Seq
Reverse (-)
34957860 .. 34958876
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49451

Sequence Viewer

Length: 657 bp
ATGGGTGCTTCCCTGAGCTATGTCTCAGATCTGGGGCTTCTGCCTCTTGTTTCTTCTATTTTTTTCACCTTCGGTCTCCCTCCCTTCTCCTTCCATCTCGCCCCAATTTTCTTTTTGAACTTTAGCCCCAAATTTGCTCTAACCCATTCCTCACCACCCATCACTTTCTTTTACCCACCATCTCTCATCTCCAGATCTTATTACCTGGATTTCTTCTATTCCATTTCAAATCGGTACCATGGCTTGGTTCTTGCAGTGGCTTCTCTCAAACGCGATTTCTCGCGTCTCAATCAAAAGATAGGTAGAGCTTTGGCTCAGGTGCATGCACCACCACCTACTTCTATGTTCTATTTTCGAGGTCTTTGGCCTCCTCCTGATCTGGGTTTCGTTTGCCTAGATTTGTTCTCTAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTATTGTGGGGAAGAGGATATATCTGTGTTTAGATCCTCTTTTTTCTTCTGTTTTTCCATTTTCAAGGTTATTTTGATCGGGCTTTGGTGTAGGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAGCTGCGACGGCCATGGTGGACGTTGGTGGTGCTGGATTTGTTGCGGCTGAAGCTTCTGATGTCTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.17

Weight (kDa)

8.16

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 2 cut(s) 273, 283
AciI CCGC 1 cut(s) 629
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 3 cut(s) 131, 442, 580
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 2 cut(s) 236, 577
AfiI CCNNNNNNNGG 2 cut(s) 244, 380
AgsI TTSAA 3 cut(s) 118, 228, 511
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 5 cut(s) 18, 308, 555, 587, 638
AluI AGCT 5 cut(s) 18, 308, 555, 587, 638
Alw26I GTCTC 4 cut(s) 28, 80, 290, 548
AlwI GGATC 1 cut(s) 474
AoxI GGCC 2 cut(s) 365, 594
ApeKI GCWGC 3 cut(s) 418, 555, 587
ApoI RAATTY 3 cut(s) 131, 442, 580
Asp718I GGTACC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 58, 144
BanI GGYRCC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 640
BbvI GCAGC 3 cut(s) 405, 542, 574
BccI CCATC 3 cut(s) 102, 167, 187
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 4 cut(s) 28, 80, 290, 548
BfaI CTAG 1 cut(s) 395
BglII AGATCT 2 cut(s) 28, 194
BisI GCNGC 4 cut(s) 419, 556, 588, 630
BlsI GCNGC 4 cut(s) 420, 557, 589, 631
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 175
Bpu10I CCTNAGC 2 cut(s) 14, 315
BsaI GGTCTC 2 cut(s) 80, 548
BsaJI CCNNGG 2 cut(s) 238, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 380
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 238, 597
BseLI CCNNNNNNNGG 2 cut(s) 244, 380
BseMII CTCAG 3 cut(s) 5, 39, 329
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 3 cut(s) 405, 542, 574
Bsh1236I CGCG 2 cut(s) 273, 283
BshFI GGCC 2 cut(s) 367, 596
BshNI GGYRCC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 244, 380
BsmAI GTCTC 4 cut(s) 28, 80, 290, 548
BsmBI CGTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 367, 596
Bso31I GGTCTC 2 cut(s) 80, 548
Bsp143I GATC 5 cut(s) 28, 194, 376, 479, 522
Bsp19I CCATGG 2 cut(s) 238, 597
BspACI CCGC 1 cut(s) 629
BspANI GGCC 2 cut(s) 367, 596
BspCNI CTCAG 3 cut(s) 6, 38, 328
BspFNI CGCG 2 cut(s) 273, 283
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 2 cut(s) 80, 548
BssECI CCNNGG 2 cut(s) 238, 597
BssMI GATC 5 cut(s) 28, 194, 376, 479, 522
BssT1I CCWWGG 2 cut(s) 238, 597
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 14, 25, 315, 408
BstDSI CCRYGG 2 cut(s) 238, 597
BstFNI CGCG 2 cut(s) 273, 283
BstKTI GATC 5 cut(s) 31, 197, 379, 482, 525
BstMAI GTCTC 4 cut(s) 28, 80, 290, 548
BstMBI GATC 5 cut(s) 28, 194, 376, 479, 522
BstMWI GCNNNNNNNGC 2 cut(s) 593, 635
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 2 cut(s) 273, 283
BstV1I GCAGC 3 cut(s) 405, 542, 574
BstV2I GAAGAC 1 cut(s) 640
BstX2I RGATCY 3 cut(s) 28, 194, 479
BstYI RGATCY 3 cut(s) 28, 194, 479
BsuRI GGCC 2 cut(s) 367, 596
BtgI CCRYGG 2 cut(s) 238, 597
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 324
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 235, 576
CviAII CATG 5 cut(s) 239, 323, 429, 573, 598
CviQI GTAC 2 cut(s) 235, 576
DdeI CTNAG 4 cut(s) 14, 25, 315, 408
DpnI GATC 5 cut(s) 30, 196, 378, 481, 524
DpnII GATC 5 cut(s) 28, 194, 376, 479, 522
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 2 cut(s) 238, 597
Eco31I GGTCTC 2 cut(s) 80, 548
Eco57I CTGAAG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 238, 597
ErhI CCWWGG 2 cut(s) 238, 597
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 5 cut(s) 242, 326, 432, 576, 601
FaiI YATR 9 cut(s) 21, 240, 324, 344, 430, 435, 467, 574, 599
FatI CATG 5 cut(s) 238, 322, 428, 572, 597
Fnu4HI GCNGC 4 cut(s) 419, 556, 588, 630
Fsp4HI GCNGC 4 cut(s) 419, 556, 588, 630
FspBI CTAG 1 cut(s) 395
GluI GCNGC 4 cut(s) 419, 556, 588, 630
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 2 cut(s) 367, 596
HgaI GACGC 1 cut(s) 272
Hin1II CATG 5 cut(s) 242, 326, 432, 576, 601
HindIII AAGCTT 1 cut(s) 636
HphI GGTGA 2 cut(s) 58, 144
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 2 cut(s) 28, 643
Hpy188III TCNNGA 2 cut(s) 192, 374
Hpy8I GTNNAC 1 cut(s) 604
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 3 cut(s) 79, 94, 100
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 6 cut(s) 254, 322, 326, 421, 440, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 593, 635
HpyF3I CTNAG 4 cut(s) 14, 25, 315, 408
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 5 cut(s) 242, 326, 432, 576, 601
KpnI GGTACC 1 cut(s) 238
Kzo9I GATC 5 cut(s) 28, 194, 376, 479, 522
LpnPI CCDG 9 cut(s) 17, 26, 191, 205, 218, 302, 365, 387, 603
Lsp1109I GCAGC 3 cut(s) 405, 542, 574
MaeI CTAG 1 cut(s) 395
MaeII ACGT 1 cut(s) 606
MalI GATC 5 cut(s) 30, 196, 378, 481, 524
MboI GATC 5 cut(s) 28, 194, 376, 479, 522
MboII GAAGA 5 cut(s) 45, 205, 470, 484, 640
MflI RGATCY 3 cut(s) 28, 194, 479
MluCI AATT 5 cut(s) 105, 131, 442, 559, 580
MnlI CCTC 8 cut(s) 54, 90, 160, 350, 378, 381, 454, 493
MseI TTAA 1 cut(s) 655
MspA1I CMGCKG 1 cut(s) 587
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 273, 283
MwoI GCNNNNNNNGC 2 cut(s) 593, 635
NcoI CCATGG 2 cut(s) 238, 597
NdeII GATC 5 cut(s) 28, 194, 376, 479, 522
NlaIII CATG 5 cut(s) 242, 326, 432, 576, 601
NlaIV GGNNCC 1 cut(s) 236
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 4 cut(s) 420, 557, 589, 631
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 236
PsuI RGATCY 3 cut(s) 28, 194, 479
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 2 cut(s) 236, 577
RsaNI GTAC 2 cut(s) 235, 576
SaqAI TTAA 1 cut(s) 655
SatI GCNGC 4 cut(s) 419, 556, 588, 630
Sau3AI GATC 5 cut(s) 28, 194, 376, 479, 522
ScrFI CCNGG 1 cut(s) 206
SphI GCATGC 1 cut(s) 326
Sse9I AATT 5 cut(s) 105, 131, 442, 559, 580
SsiI CCGC 1 cut(s) 629
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 238, 597
TaiI ACGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 355
TaqII GACCGA 1 cut(s) 62
TasI AATT 5 cut(s) 105, 131, 442, 559, 580
TauI GCSGC 1 cut(s) 632
Tru1I TTAA 1 cut(s) 655
Tru9I TTAA 1 cut(s) 655
TscAI CASTG 1 cut(s) 261
TseI GCWGC 3 cut(s) 418, 555, 587
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 244
XapI RAATTY 3 cut(s) 131, 442, 580
XceI RCATGY 1 cut(s) 326
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.