Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

4473968 .. 4474566

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTGCTTCCCTGAGCTATTTCTTAGTTTTCCTGAGCTATGTCTCAGATCTGGGGCTTCTGCCTCTTGTTTCTTCTCTTTTTTTCTCCTTCGGTCTCCCTCCCTTCTCCTTCCATTTTGCCCCAATTTTCTTTCTGCACTTTAGCCCTAAATTTGCTCTAACCCATTCCTCACCACCCATCACCTTCTTTTACCCACCATCTCTCATCTCCAGATCTTGTTGCCTGGATTTCTTCTATTCCATTTCAAATTGGTACCATGGCTTGGTTGTTGCAGTGGCTTCTCTCAAATGCAATTTCTCCCGTCTCAATCGGAAGATAGGTAGAGCCTTGGTTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTTAATTCGGGGCCTCTTGGCTCCTCCTGATCTAGGTTTCGGTTATTTTGATCAGGCTATGGTGTATGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

9.44

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	265, 336, 401
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	18, 39, 451
AluI	AGCT	3 cut(s)	18, 39, 451
Alw26I	GTCTC	4 cut(s)	49, 101, 311, 444
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	165, 175
BanI	GGYRCC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	188, 208
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	4 cut(s)	49, 101, 311, 444
BfaI	CTAG	1 cut(s)	401
BglII	AGATCT	2 cut(s)	49, 215
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	3 cut(s)	257, 380, 390
BmrFI	CCNGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	14, 35
BsaI	GGTCTC	2 cut(s)	101, 444
BsaJI	CCNNGG	2 cut(s)	259, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 336, 401
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	259, 330
BseLI	CCNNNNNNNGG	3 cut(s)	265, 336, 401
BseMII	CTCAG	3 cut(s)	5, 26, 60
BseRI	GAGGAG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	265, 336, 401
BsmAI	GTCTC	4 cut(s)	49, 101, 311, 444
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	2 cut(s)	101, 444
Bsp143I	GATC	4 cut(s)	49, 215, 397, 418
Bsp19I	CCATGG	1 cut(s)	259
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	3 cut(s)	6, 27, 59
BspLI	GGNNCC	3 cut(s)	257, 380, 390
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	2 cut(s)	101, 444
BssECI	CCNNGG	2 cut(s)	259, 330
BssMI	GATC	4 cut(s)	49, 215, 397, 418
BssT1I	CCWWGG	2 cut(s)	259, 330
Bst2UI	CCWGG	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	14, 25, 35, 46
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstKTI	GATC	4 cut(s)	52, 218, 400, 421
BstMAI	GTCTC	4 cut(s)	49, 101, 311, 444
BstMBI	GATC	4 cut(s)	49, 215, 397, 418
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	49, 215
BstYI	RGATCY	2 cut(s)	49, 215
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	260, 344
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	4 cut(s)	14, 25, 35, 46
DpnI	GATC	4 cut(s)	51, 217, 399, 420
DpnII	GATC	4 cut(s)	49, 215, 397, 418
Eco130I	CCWWGG	2 cut(s)	259, 330
Eco31I	GGTCTC	2 cut(s)	101, 444
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	259, 330
ErhI	CCWWGG	2 cut(s)	259, 330
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	2 cut(s)	263, 347
FaiI	YATR	7 cut(s)	42, 261, 345, 362, 428, 435, 470
FatI	CATG	2 cut(s)	259, 343
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	263, 347
HphI	GGTGA	2 cut(s)	165, 175
Hpy188I	TCNGA	2 cut(s)	49, 315
Hpy188III	TCNNGA	3 cut(s)	34, 213, 395
HpyAV	CCTTC	5 cut(s)	100, 115, 121, 196, 366
HpyCH4V	TGCA	6 cut(s)	139, 275, 294, 343, 347, 454
HpyF3I	CTNAG	4 cut(s)	14, 25, 35, 46
Hsp92II	CATG	2 cut(s)	263, 347
KpnI	GGTACC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	49, 215, 397, 418
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	8 cut(s)	26, 38, 47, 212, 226, 239, 407, 408
Lsp1109I	GCAGC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	401
MalI	GATC	4 cut(s)	51, 217, 399, 420
MboI	GATC	4 cut(s)	49, 215, 397, 418
MboII	GAAGA	3 cut(s)	66, 226, 328
MflI	RGATCY	2 cut(s)	49, 215
MluCI	AATT	6 cut(s)	126, 152, 250, 295, 372, 455
MnlI	CCTC	6 cut(s)	75, 111, 181, 363, 392, 402
MseI	TTAA	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	4 cut(s)	49, 215, 397, 418
NlaIII	CATG	2 cut(s)	263, 347
NlaIV	GGNNCC	3 cut(s)	257, 380, 390
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	257, 380, 390
PspPI	GGNCC	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	49, 215
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	4 cut(s)	49, 215, 397, 418
Sau96I	GGNCC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	7 cut(s)	20, 41, 188, 325, 355, 406, 453
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	6 cut(s)	126, 152, 250, 295, 372, 455
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	259, 330
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	6 cut(s)	126, 152, 250, 295, 372, 455
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	451
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	265
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.