Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

52654126 .. 52657056

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003782

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACAGAATAAGCAACTTACCAGTTGATGTTACACACAGAATTTTGTGTAAGTTGTCCATCAAGGAGGCAGTGAGGACAACTGTTTTATCAAGAAACTGGAAGCACAACTGCGATATGCTCCCACATCTTGTGTTTGATGATCGGTGTTGCGTCTCAGATCAAAATGTGACTCCTCTCAAACGCGATTTCTCGCGTCTCACTCTGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTATCGGGGTCTACTGGCTCCATGTGTTTTGGGCTTCGTTTGCCCAGATTTGTTCTCTGAGTTGTGGCTGCAAATCTCATGTTATGGTGCAGATTTCTACTGTGGGGATGATGATGAATCTGTGTTTAGATCCTCTATTTTCTTCTTTTTTTCCATTTTCAGGGTTATTTTGATCGGGCTTTGGTGTAGGGGTCTCTTTTCAAGCTGCAATTTTGGAGTTCCATGTATGGATTTAGCTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATCTGTGGCGGCTGAAGACAATGAGAAGTTTAGAATTAGGCTCCAGTGTGCTGTTGACTCCTTCCAAGAGGAGCTGCCGAAACCATATCTTTGTTTGAAGTCTCTTTGTTTGAGCATACGCTTGAATAATTCGGAGGAGATTTTAGCAGCTATACGCCTTCTAAGAAGTTCACCTGCTCTACAAGATCTAGAACTTTCAGTTCGCCAAGGAGATGGGGCTGCGTTTGCTCCTGGAGGAACAACCTATTGGTTAAATGACAACCAGAACTGGGACGAATTCAGCCAACTGAAGACGCTGAAAGTAACCAGCTTCTCTGCTGGTGCCAGAAAGGAAGTAGATTTCATTAAATTTCTGCTCGTAAGCTCTCCTGCTCTTCGACAACTAGAAATTTCGGCTCGGAAACATGATCCAGCGGTGGGAAAATCGAAGTCGTTGTTAGATGACTTCCAGAACTGCTTGTTCACCCAACTGCGAGTTGTGAAATTAACAGGCATTTCAGGTGTCCAATCTGAAGTAGATCTCATCACATTTCTGCTTCGGTATTCACCTGTGCTTGAGAAGATGACTGTCCGGCCTGCTTCTGTCAGTAGTTCTTCCGAGCGTGAGCTATTTAAAAAGTTGCTTCAGCTTAGGCGCGCCTCGGTGAGAGCAGAAATAGAGTACTTAGATCCATTAAAGCATGCACAACGTAAGATGGATTCCAAATCCGAATCTGAAACCTCCTCCGAATCTGACTCGGACTCAGACTCAGATTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

431

Amino Acids

48.28

Weight (kDa)

6.35

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 42	4.4e-06	F-box domain
FBD	PF08387	329 - 366	3.3e-07	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	712
Acc36I	ACCTGC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	3 cut(s)	186, 196, 1167
AciI	CCGC	2 cut(s)	539, 944
AclWI	GGATC	4 cut(s)	384, 538, 932, 1193
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	4 cut(s)	42, 806, 878, 918
AcuI	CTGAAG	5 cut(s)	227, 564, 839, 1062, 1139
AfaI	GTAC	1 cut(s)	1193
AfiI	CCNNNNNNNGG	3 cut(s)	420, 799, 947
AgsI	TTSAA	3 cut(s)	462, 628, 655
AjnI	CCWGG	1 cut(s)	760
AjuI	GAANNNNNNNTTGG	2 cut(s)	760, 792
AluBI	AGCT	9 cut(s)	221, 465, 497, 604, 680, 840, 894, 1138, 1159
AluI	AGCT	9 cut(s)	221, 465, 497, 604, 680, 840, 894, 1138, 1159
Alw26I	GTCTC	4 cut(s)	160, 203, 458, 636
AlwI	GGATC	4 cut(s)	384, 538, 932, 1193
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	504, 1103
ApeKI	GCWGC	5 cut(s)	328, 465, 604, 677, 749
ApoI	RAATTY	4 cut(s)	42, 806, 878, 918
AscI	GGCGCGCC	1 cut(s)	1165
AspLEI	GCGC	2 cut(s)	1167, 1169
AsuHPI	GGTGA	4 cut(s)	693, 985, 1068, 1186
AvaI	CYCGRG	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	851
BbsI	GAAGAC	2 cut(s)	552, 827
BbvI	GCAGC	5 cut(s)	315, 452, 591, 689, 736
BccI	CCATC	3 cut(s)	68, 737, 1219
BceAI	ACGGC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	762
BcoDI	GTCTC	4 cut(s)	160, 203, 458, 636
BfaI	CTAG	2 cut(s)	719, 914
BfuAI	ACCTGC	1 cut(s)	712
BglII	AGATCT	2 cut(s)	715, 1048
BisI	GCNGC	6 cut(s)	329, 466, 540, 605, 678, 750
BlsI	GCNGC	6 cut(s)	330, 467, 541, 606, 679, 751
BmcAI	AGTACT	1 cut(s)	1193
Bme1390I	CCNGG	1 cut(s)	762
BmeT110I	CYCGRG	1 cut(s)	228
BmiI	GGNNCC	3 cut(s)	279, 572, 853
BmrFI	CCNGG	1 cut(s)	762
BmrI	ACTGGG	1 cut(s)	808
BmuI	ACTGGG	1 cut(s)	808
BpiI	GAAGAC	2 cut(s)	552, 827
BpmI	CTGGAG	2 cut(s)	557, 783
Bpu10I	CCTNAGC	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	1106
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	507, 736, 1170
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 799, 947
Bse1I	ACTGG	5 cut(s)	23, 104, 279, 574, 803
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	3 cut(s)	507, 736, 1170
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	420, 799, 947
BseMII	CTCAG	4 cut(s)	171, 309, 1287, 1293
BseNI	ACTGG	5 cut(s)	23, 104, 279, 574, 803
BsePI	GCGCGC	1 cut(s)	1165
BseRI	GAGGAG	4 cut(s)	165, 614, 680, 1243
BseXI	GCAGC	5 cut(s)	315, 452, 591, 689, 736
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	3 cut(s)	186, 196, 1167
BshFI	GGCC	2 cut(s)	506, 1105
BshNI	GGYRCC	1 cut(s)	851
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	1102
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	3 cut(s)	420, 799, 947
BsmAI	GTCTC	4 cut(s)	160, 203, 458, 636
BsmBI	CGTCTC	2 cut(s)	160, 203
BsmFI	GGGAC	1 cut(s)	815
BsnI	GGCC	2 cut(s)	506, 1105
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	228
Bsp143I	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	2 cut(s)	539, 944
BspANI	GGCC	2 cut(s)	506, 1105
BspCNI	CTCAG	4 cut(s)	170, 310, 1286, 1292
BspFNI	CGCG	3 cut(s)	186, 196, 1167
BspLI	GGNNCC	3 cut(s)	279, 572, 853
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	4 cut(s)	384, 538, 932, 1193
BspQI	GCTCTTC	1 cut(s)	909
BspT107I	GGYRCC	1 cut(s)	851
BspTNI	GGTCTC	1 cut(s)	458
BsrI	ACTGG	5 cut(s)	23, 104, 279, 574, 803
BssECI	CCNNGG	3 cut(s)	507, 736, 1170
BssHII	GCGCGC	1 cut(s)	1165
BssMI	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
BssT1I	CCWWGG	2 cut(s)	507, 736
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	3 cut(s)	85, 362, 1099
Bst6I	CTCTTC	1 cut(s)	909
BstC8I	GCNNGC	4 cut(s)	237, 1107, 1167, 1212
BstDEI	CTNAG	7 cut(s)	157, 318, 692, 1160, 1195, 1273, 1279
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	3 cut(s)	186, 196, 1167
BstHHI	GCGC	2 cut(s)	1167, 1169
BstKTI	GATC	9 cut(s)	145, 163, 392, 435, 533, 718, 940, 1051, 1201
BstMAI	GTCTC	4 cut(s)	160, 203, 458, 636
BstMBI	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 503, 755
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	2 cut(s)	239, 1214
BstSCI	CCNGG	1 cut(s)	760
BstUI	CGCG	3 cut(s)	186, 196, 1167
BstV1I	GCAGC	5 cut(s)	315, 452, 591, 689, 736
BstV2I	GAAGAC	2 cut(s)	552, 827
BstX2I	RGATCY	5 cut(s)	389, 530, 715, 1048, 1198
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	5 cut(s)	389, 530, 715, 1048, 1198
BsuRI	GGCC	2 cut(s)	506, 1105
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 581
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	4 cut(s)	237, 1107, 1167, 1212
CfoI	GCGC	2 cut(s)	1167, 1169
CseI	GACGC	3 cut(s)	142, 185, 832
Csp6I	GTAC	1 cut(s)	1192
CviAII	CATG	7 cut(s)	236, 282, 339, 483, 508, 935, 1211
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	7 cut(s)	157, 318, 692, 1160, 1195, 1273, 1279
DpnI	GATC	9 cut(s)	144, 162, 391, 434, 532, 717, 939, 1050, 1200
DpnII	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
DraI	TTTAAA	1 cut(s)	1144
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Eco130I	CCWWGG	2 cut(s)	507, 736
Eco31I	GGTCTC	1 cut(s)	458
Eco57I	CTGAAG	5 cut(s)	227, 564, 839, 1062, 1139
Eco88I	CYCGRG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	806
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	2 cut(s)	507, 736
ErhI	CCWWGG	2 cut(s)	507, 736
Esp3I	CGTCTC	2 cut(s)	160, 203
FaeI	CATG	7 cut(s)	239, 285, 342, 486, 511, 938, 1214
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	7 cut(s)	235, 281, 338, 482, 507, 934, 1210
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	6 cut(s)	329, 466, 540, 605, 678, 750
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	329, 466, 540, 605, 678, 750
FspBI	CTAG	2 cut(s)	719, 914
GlaI	GCGC	2 cut(s)	1166, 1168
GluI	GCNGC	6 cut(s)	329, 466, 540, 605, 678, 750
GsuI	CTGGAG	2 cut(s)	557, 783
HaeIII	GGCC	2 cut(s)	506, 1105
HapII	CCGG	1 cut(s)	1102
HgaI	GACGC	3 cut(s)	142, 185, 832
HhaI	GCGC	2 cut(s)	1167, 1169
Hin1II	CATG	7 cut(s)	239, 285, 342, 486, 511, 938, 1214
Hin6I	GCGC	2 cut(s)	1165, 1167
HinP1I	GCGC	2 cut(s)	1165, 1167
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HpaII	CCGG	1 cut(s)	1102
HphI	GGTGA	4 cut(s)	693, 985, 1068, 1186
Hpy166II	GTNNAC	5 cut(s)	272, 514, 586, 701, 993
Hpy188III	TCNNGA	3 cut(s)	93, 719, 979
Hpy8I	GTNNAC	5 cut(s)	272, 514, 586, 701, 993
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	3 cut(s)	258, 601, 698
HpyCH4III	ACNGT	3 cut(s)	85, 362, 1099
HpyCH4IV	ACGT	2 cut(s)	516, 1219
HpyCH4V	TGCA	6 cut(s)	235, 239, 331, 350, 468, 1214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 503, 755
HpyF3I	CTNAG	7 cut(s)	157, 318, 692, 1160, 1195, 1273, 1279
HpySE526I	ACGT	2 cut(s)	516, 1219
Hsp92II	CATG	7 cut(s)	239, 285, 342, 486, 511, 938, 1214
HspAI	GCGC	2 cut(s)	1165, 1167
Kzo9I	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	5 cut(s)	126, 283, 576, 601, 763
Lsp1109I	GCAGC	5 cut(s)	315, 452, 591, 689, 736
MaeI	CTAG	2 cut(s)	719, 914
MaeII	ACGT	2 cut(s)	516, 1219
MaeIII	GTNAC	3 cut(s)	31, 169, 832
MalI	GATC	9 cut(s)	144, 162, 391, 434, 532, 717, 939, 1050, 1200
MboI	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
MboII	GAAGA	7 cut(s)	220, 394, 557, 832, 896, 1102, 1116
MflI	RGATCY	5 cut(s)	389, 530, 715, 1048, 1198
MluCI	AATT	8 cut(s)	42, 469, 564, 658, 806, 878, 918, 1013
MlyI	GAGTC	5 cut(s)	166, 581, 1259, 1265, 1271
MseI	TTAA	5 cut(s)	782, 876, 1016, 1143, 1205
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	1 cut(s)	1102
MspR9I	CCNGG	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	762
MvnI	CGCG	3 cut(s)	186, 196, 1167
MwoI	GCNNNNNNNGC	3 cut(s)	300, 503, 755
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
NlaIII	CATG	7 cut(s)	239, 285, 342, 486, 511, 938, 1214
NlaIV	GGNNCC	3 cut(s)	279, 572, 853
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	2 cut(s)	239, 1214
PaeI	GCATGC	2 cut(s)	239, 1214
PalAI	GGCGCGCC	1 cut(s)	1165
PaqCI	CACCTGC	1 cut(s)	712
PauI	GCGCGC	1 cut(s)	1165
PciSI	GCTCTTC	1 cut(s)	909
PfeI	GAWTC	5 cut(s)	377, 1229, 1241, 1259, 1283
PfoI	TCCNGGA	1 cut(s)	760
PkrI	GCNGC	6 cut(s)	330, 467, 541, 606, 679, 751
PleI	GAGTC	5 cut(s)	166, 581, 1259, 1265, 1271
PpsI	GAGTC	5 cut(s)	166, 581, 1259, 1265, 1271
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	3 cut(s)	279, 572, 853
PsuI	RGATCY	5 cut(s)	389, 530, 715, 1048, 1198
PteI	GCGCGC	1 cut(s)	1165
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	5 cut(s)	782, 876, 1016, 1143, 1205
SatI	GCNGC	6 cut(s)	329, 466, 540, 605, 678, 750
Sau3AI	GATC	9 cut(s)	142, 160, 389, 432, 530, 715, 937, 1048, 1198
ScaI	AGTACT	1 cut(s)	1193
SchI	GAGTC	5 cut(s)	166, 581, 1259, 1265, 1271
ScrFI	CCNGG	1 cut(s)	762
SgsI	GGCGCGCC	1 cut(s)	1165
SmlI	CTYRAG	1 cut(s)	1085
SmoI	CTYRAG	1 cut(s)	1085
SphI	GCATGC	2 cut(s)	239, 1214
Sse9I	AATT	8 cut(s)	42, 469, 564, 658, 806, 878, 918, 1013
SsiI	CCGC	2 cut(s)	539, 944
SspMI	CTAG	2 cut(s)	719, 914
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	2 cut(s)	507, 736
TaaI	ACNGT	3 cut(s)	85, 362, 1099
TaiI	ACGT	2 cut(s)	519, 1222
TaqI	TCGA	2 cut(s)	907, 956
TasI	AATT	8 cut(s)	42, 469, 564, 658, 806, 878, 918, 1013
TatI	WGTACW	1 cut(s)	1191
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	5 cut(s)	377, 1229, 1241, 1259, 1283
Tru1I	TTAA	5 cut(s)	782, 876, 1016, 1143, 1205
Tru9I	TTAA	5 cut(s)	782, 876, 1016, 1143, 1205
TscAI	CASTG	2 cut(s)	78, 581
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	328, 465, 604, 677, 749
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	390, 862
TspRI	CASTG	2 cut(s)	78, 581
XapI	RAATTY	4 cut(s)	42, 806, 878, 918
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	2 cut(s)	239, 1214
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	2 cut(s)	719, 914
ZrmI	AGTACT	1 cut(s)	1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.