Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Forward (+)

86050501 .. 86051533

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG641400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGTGCTTGCCTGAGCTATGTCTCAGCTTCCCTGAGCTATGTCTCAGATCTGAGGCTTTTGCCTTTTGCTTCATCTCTTTTTTTCTCCTCCGGTCTCCTTCCCTTCTCCTTCCATCTTGCCCCATTTTTCTGTCTGTATCTTAGCCCCAAATTTTCTCTAACTCATTCCTCACCACCCATCACCTTCTTGTACCCACCACCTCTCATCTCCAGATCTTGTTGCCCAGATTTTTTCTTTTCCTTTTCAAATCGGTACCATGGCTTGGTTCTTGCAGTGACTCCTCTCAAATGCGATTTCTCGCGTCTCACTCGGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTATCGGGGTCTATTGGCTCCATGTGTTCTGGGCTTCGATTGCCCAGATTTCTTCTCTGAGTTGTGGCTGCAAATCTCATGTTATGGTGCAGATTTCTACTGTGGGGATGATGATGAATCTGTGTTTAGATCTTCTATTTTCTTCTTTTTTTCCATTTTCAGGGTTATTTTGATCGGGCTTTGGTGTAGGGGTCTCTCTTCAAGCTGCAATTTTGGAGTCCCATGTATGGATTCAGCTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATCTGTGGCGGCTGAAGACAAGGAGCAGTTTAGAATTAGGGTTTTCTTTTGTTTGTTGTTTTCTGTTGGGCCTCCTACTGTTTGTTTGGGCTCCGACTTTTGTGTATTTTTTTTATCTTTTCGGCATTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.73

Weight (kDa)

7.44

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	1 cut(s)	304
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	2 cut(s)	194, 257
AfiI	CCNNNNNNNGG	3 cut(s)	265, 528, 595
AgsI	TTSAA	2 cut(s)	249, 570
AluBI	AGCT	6 cut(s)	18, 29, 39, 329, 573, 605
AluI	AGCT	6 cut(s)	18, 29, 39, 329, 573, 605
Alw26I	GTCTC	5 cut(s)	28, 49, 101, 311, 566
AlwI	GGATC	1 cut(s)	646
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	612, 707
ApeKI	GCWGC	2 cut(s)	436, 573
ApoI	RAATTY	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	165, 175
AvaI	CYCGRG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	2 cut(s)	423, 560
BccI	CCATC	2 cut(s)	123, 188
BceAI	ACGGC	1 cut(s)	627
BcoDI	GTCTC	5 cut(s)	28, 49, 101, 311, 566
BglII	AGATCT	3 cut(s)	49, 215, 497
BisI	GCNGC	3 cut(s)	437, 574, 648
BlsI	GCNGC	3 cut(s)	438, 575, 649
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	3 cut(s)	257, 387, 730
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	14, 35
BsaI	GGTCTC	2 cut(s)	101, 566
BsaJI	CCNNGG	2 cut(s)	259, 615
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 528, 595
BseDI	CCNNGG	2 cut(s)	259, 615
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	265, 528, 595
BseMII	CTCAG	6 cut(s)	5, 26, 39, 44, 60, 417
BseRI	GAGGAG	2 cut(s)	79, 273
BseXI	GCAGC	2 cut(s)	423, 560
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	614, 709
BshNI	GGYRCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	3 cut(s)	265, 528, 595
BsmAI	GTCTC	5 cut(s)	28, 49, 101, 311, 566
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	2 cut(s)	614, 709
Bso31I	GGTCTC	2 cut(s)	101, 566
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	5 cut(s)	49, 215, 497, 540, 638
Bsp19I	CCATGG	2 cut(s)	259, 615
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	2 cut(s)	614, 709
BspCNI	CTCAG	6 cut(s)	6, 27, 38, 45, 59, 418
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	257, 387, 730
BspPI	GGATC	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	2 cut(s)	101, 566
BssECI	CCNNGG	2 cut(s)	259, 615
BssMI	GATC	5 cut(s)	49, 215, 497, 540, 638
BssT1I	CCWWGG	2 cut(s)	259, 615
Bst4CI	ACNGT	2 cut(s)	470, 718
Bst6I	CTCTTC	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	10, 345
BstDEI	CTNAG	7 cut(s)	14, 25, 35, 46, 53, 143, 426
BstDSI	CCRYGG	2 cut(s)	259, 615
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	5 cut(s)	52, 218, 500, 543, 641
BstMAI	GTCTC	5 cut(s)	28, 49, 101, 311, 566
BstMBI	GATC	5 cut(s)	49, 215, 497, 540, 638
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 611
BstNSI	RCATGY	1 cut(s)	347
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	423, 560
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	4 cut(s)	49, 215, 497, 638
BstYI	RGATCY	4 cut(s)	49, 215, 497, 638
BsuRI	GGCC	2 cut(s)	614, 709
BtgI	CCRYGG	2 cut(s)	259, 615
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	10, 345
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	193, 256
CviAII	CATG	6 cut(s)	260, 344, 390, 447, 591, 616
CviQI	GTAC	2 cut(s)	193, 256
DdeI	CTNAG	7 cut(s)	14, 25, 35, 46, 53, 143, 426
DpnI	GATC	5 cut(s)	51, 217, 499, 542, 640
DpnII	GATC	5 cut(s)	49, 215, 497, 540, 638
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	259, 615
Eco24I	GRGCYC	1 cut(s)	731
Eco31I	GGTCTC	2 cut(s)	101, 566
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	259, 615
EcoT38I	GRGCYC	1 cut(s)	731
ErhI	CCWWGG	2 cut(s)	259, 615
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	6 cut(s)	263, 347, 393, 450, 594, 619
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	6 cut(s)	259, 343, 389, 446, 590, 615
Fnu4HI	GCNGC	3 cut(s)	437, 574, 648
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	731
Fsp4HI	GCNGC	3 cut(s)	437, 574, 648
GluI	GCNGC	3 cut(s)	437, 574, 648
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	614, 709
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	6 cut(s)	263, 347, 393, 450, 594, 619
HinfI	GANTC	4 cut(s)	280, 485, 585, 599
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	165, 175
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	5 cut(s)	49, 54, 315, 427, 733
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	5 cut(s)	110, 115, 121, 196, 366
HpyCH4III	ACNGT	2 cut(s)	470, 718
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	275, 343, 347, 439, 458, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 611
HpyF3I	CTNAG	7 cut(s)	14, 25, 35, 46, 53, 143, 426
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	6 cut(s)	263, 347, 393, 450, 594, 619
KpnI	GGTACC	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	49, 215, 497, 540, 638
LmnI	GCTCC	3 cut(s)	391, 661, 734
LpnPI	CCDG	9 cut(s)	26, 47, 106, 226, 240, 383, 426, 514, 621
Lsp1109I	GCAGC	2 cut(s)	423, 560
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	5 cut(s)	51, 217, 499, 542, 640
MboI	GATC	5 cut(s)	49, 215, 497, 540, 638
MboII	GAAGA	6 cut(s)	328, 412, 492, 502, 558, 665
MflI	RGATCY	4 cut(s)	49, 215, 497, 638
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	3 cut(s)	152, 577, 672
MlyI	GAGTC	2 cut(s)	274, 594
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	7 cut(s)	48, 100, 181, 213, 294, 363, 720
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	408, 611
NcoI	CCATGG	2 cut(s)	259, 615
NdeII	GATC	5 cut(s)	49, 215, 497, 540, 638
NlaIII	CATG	6 cut(s)	263, 347, 393, 450, 594, 619
NlaIV	GGNNCC	3 cut(s)	257, 387, 730
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	485, 599
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	438, 575, 649
PleI	GAGTC	2 cut(s)	274, 593
PpsI	GAGTC	2 cut(s)	274, 593
PspN4I	GGNNCC	3 cut(s)	257, 387, 730
PspPI	GGNCC	1 cut(s)	707
PsuI	RGATCY	4 cut(s)	49, 215, 497, 638
RsaI	GTAC	2 cut(s)	194, 257
RsaNI	GTAC	2 cut(s)	193, 256
SatI	GCNGC	3 cut(s)	437, 574, 648
Sau3AI	GATC	5 cut(s)	49, 215, 497, 540, 638
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	274, 594
SduI	GDGCHC	1 cut(s)	731
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	3 cut(s)	152, 577, 672
SsiI	CCGC	1 cut(s)	647
StyI	CCWWGG	2 cut(s)	259, 615
TaaI	ACNGT	2 cut(s)	470, 718
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	152, 577, 672
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	2 cut(s)	485, 599
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	436, 573
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	63, 498
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.