Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

25222845 .. 25223743

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG117200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGTGCTTCCCTGAGCTATGTCTCAGTTTCCCTGAGCTATGTCTCAGATCTGGGGCTTTTGCCTCTTGTTTCTTCTCTTTTTTTCACCTTCGGTCTCCCTCCCTTCTCCTTCCATCTTGCCCCAATTTTCTTTCTGATCTTTAGCCCCAAATTTGCTCTAACCCATTCCTCACCACCCATCACTTTCTTTTACATACCTTCTCTCATCTCCAGATCTTGTTGCCTGGATTTCTTCTATTCCATTTCAAATCGGTACCATGGCTTGGTTCTTGCAGTGGCTTCTCTCAAACGCGATTTCTCGCGTCTCAATCGGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTACTTCTATGTTCTATTTTTGGGGTCTTTTGCCTCCTCCTGATCTGGGTTTCGTTTGCCTAGATTTGTTCTCTAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTACTGTGGGGAAGAGGATATATCTGTGTTTAGATCCTCTTTTTTCTTCTGTTTTTCCATTTTCAGGGTTATTTTGATCGGGCTTTGGTGTAGGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTTAGCTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATTTGTTGCGGCTGAAGCTTCTGATGTCTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.8

Weight (kDa)

8.39

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	2 cut(s)	294, 304
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	3 cut(s)	152, 460, 598
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	3 cut(s)	257, 467, 595
AfiI	CCNNNNNNNGG	3 cut(s)	265, 398, 528
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	6 cut(s)	18, 39, 329, 573, 605, 656
AluI	AGCT	6 cut(s)	18, 39, 329, 573, 605, 656
Alw26I	GTCTC	5 cut(s)	28, 49, 101, 311, 566
AlwI	GGATC	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	436, 573
ApoI	RAATTY	3 cut(s)	152, 460, 598
Asp718I	GGTACC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	79, 165
AvaI	CYCGRG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	423, 560
BccI	CCATC	2 cut(s)	123, 188
BceAI	ACGGC	1 cut(s)	627
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	5 cut(s)	28, 49, 101, 311, 566
BfaI	CTAG	1 cut(s)	413
BglII	AGATCT	2 cut(s)	49, 215
BisI	GCNGC	3 cut(s)	437, 574, 648
BlsI	GCNGC	3 cut(s)	438, 575, 649
Bme1390I	CCNGG	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	658
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	14, 35
BsaI	GGTCTC	2 cut(s)	101, 566
BsaJI	CCNNGG	2 cut(s)	259, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 398, 528
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	259, 615
BseLI	CCNNNNNNNGG	3 cut(s)	265, 398, 528
BseMII	CTCAG	4 cut(s)	5, 26, 39, 60
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	423, 560
Bsh1236I	CGCG	2 cut(s)	294, 304
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	336
BslI	CCNNNNNNNGG	3 cut(s)	265, 398, 528
BsmAI	GTCTC	5 cut(s)	28, 49, 101, 311, 566
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	614
Bso31I	GGTCTC	2 cut(s)	101, 566
BsoBI	CYCGRG	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
Bsp19I	CCATGG	2 cut(s)	259, 615
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	4 cut(s)	6, 27, 38, 59
BspFNI	CGCG	2 cut(s)	294, 304
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	2 cut(s)	101, 566
BssECI	CCNNGG	2 cut(s)	259, 615
BssMI	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
BssT1I	CCWWGG	2 cut(s)	259, 615
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	5 cut(s)	14, 25, 35, 46, 426
BstDSI	CCRYGG	2 cut(s)	259, 615
BstFNI	CGCG	2 cut(s)	294, 304
BstKTI	GATC	6 cut(s)	52, 141, 218, 397, 500, 543
BstMAI	GTCTC	5 cut(s)	28, 49, 101, 311, 566
BstMBI	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 653
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	2 cut(s)	294, 304
BstV1I	GCAGC	2 cut(s)	423, 560
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	3 cut(s)	49, 215, 497
BstYI	RGATCY	3 cut(s)	49, 215, 497
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	2 cut(s)	259, 615
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	345
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	256, 466, 594
CviAII	CATG	5 cut(s)	260, 344, 447, 591, 616
CviQI	GTAC	3 cut(s)	256, 466, 594
DdeI	CTNAG	5 cut(s)	14, 25, 35, 46, 426
DpnI	GATC	6 cut(s)	51, 140, 217, 396, 499, 542
DpnII	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	2 cut(s)	259, 615
Eco31I	GGTCTC	2 cut(s)	101, 566
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	259, 615
ErhI	CCWWGG	2 cut(s)	259, 615
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	5 cut(s)	263, 347, 450, 594, 619
FatI	CATG	5 cut(s)	259, 343, 446, 590, 615
Fnu4HI	GCNGC	3 cut(s)	437, 574, 648
Fsp4HI	GCNGC	3 cut(s)	437, 574, 648
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	3 cut(s)	437, 574, 648
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	614
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	263, 347, 450, 594, 619
HindIII	AAGCTT	1 cut(s)	654
HphI	GGTGA	2 cut(s)	79, 165
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	4 cut(s)	49, 138, 315, 661
Hpy188III	TCNNGA	2 cut(s)	213, 392
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	4 cut(s)	100, 115, 121, 210
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	275, 343, 347, 439, 458, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 653
HpyF3I	CTNAG	5 cut(s)	14, 25, 35, 46, 426
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	263, 347, 450, 594, 619
KpnI	GGTACC	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
Lsp1109I	GCAGC	2 cut(s)	423, 560
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	624
MalI	GATC	6 cut(s)	51, 140, 217, 396, 499, 542
MboI	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
MboII	GAAGA	6 cut(s)	66, 226, 328, 488, 502, 658
MflI	RGATCY	3 cut(s)	49, 215, 497
MluCI	AATT	5 cut(s)	126, 152, 460, 577, 598
MnlI	CCTC	7 cut(s)	75, 111, 181, 396, 399, 472, 511
MseI	TTAA	1 cut(s)	673
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	294, 304
MwoI	GCNNNNNNNGC	2 cut(s)	611, 653
NcoI	CCATGG	2 cut(s)	259, 615
NdeII	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
NlaIII	CATG	5 cut(s)	263, 347, 450, 594, 619
NlaIV	GGNNCC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	438, 575, 649
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	49, 215, 497
RsaI	GTAC	3 cut(s)	257, 467, 595
RsaNI	GTAC	3 cut(s)	256, 466, 594
SaqAI	TTAA	1 cut(s)	673
SatI	GCNGC	3 cut(s)	437, 574, 648
Sau3AI	GATC	6 cut(s)	49, 138, 215, 394, 497, 540
ScrFI	CCNGG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	5 cut(s)	126, 152, 460, 577, 598
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	259, 615
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	627
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	5 cut(s)	126, 152, 460, 577, 598
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	2 cut(s)	436, 573
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	3 cut(s)	152, 460, 598
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.