RLG00000030624

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007550
Physical Location & Seq
Reverse (-)
64628056 .. 64628959
904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030624

Sequence Viewer

Length: 693 bp
ATGGGTGCTTGCCTGAGTTATGTCTCAGTTTCCCTGAGCTATGTCTTAGATATGAGGCTTTTGCCTCTTGTTTTATCTCTTTTTCTCTCTTTCGGACTCCTTCCCTTCTCCTTCCATCTTACCCCATTTTTCTTTTTGAACCTTAGCCCCAAATTTTCTCTAACCAATTCCTCACCGCCTATCACCTTCTTTTATCCACCATCTCTCATCTCTGGATCTTGTCGCCTAAATTTTTTCTTTTCCTTTTCAAATCGGTACCATGACTTGATTCTTGCAGTGACTCCTCTCAAACGCGATTTCTCGCGTCTCACTCGGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATGCTTGGGGTCTATTGGCTCCACGTGTTTTGGGCTTCATTCGCCTAGATTTGTTCTCTGAGTTGTGGCTGCAAATCTCATGTTATGGTGTCTACTGTGGAGATGATGATAATTTTGTGGGTCTCTTTTCAAGCTGCAATTTTGGAGTTCCATGTATGAATTCAGCTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATTTGTGGCGGCTGAAGACGATGAGAAAATGCTTTCTAAATCAAGATTGATTGAGATTGGGTCATGTACTTCTTTAGGTCAGCCTAATAAGTACATCAACGAGTCACAACCAATCTCTGTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.56

Weight (kDa)

8.15

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 459
AccII CGCG 2 cut(s) 294, 304
AciI CCGC 2 cut(s) 176, 575
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 3 cut(s) 152, 229, 526
AcuI CTGAAG 1 cut(s) 600
AcvI CACGTG 1 cut(s) 392
AfaI GTAC 3 cut(s) 257, 634, 659
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 3 cut(s) 139, 249, 498
AluBI AGCT 4 cut(s) 39, 329, 501, 533
AluI AGCT 4 cut(s) 39, 329, 501, 533
Alw26I GTCTC 3 cut(s) 28, 311, 494
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 436, 501
ApoI RAATTY 3 cut(s) 152, 229, 526
Asp718I GGTACC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 165, 175
AvaI CYCGRG 1 cut(s) 336
BanI GGYRCC 1 cut(s) 255
BbrPI CACGTG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 423, 488
BccI CCATC 2 cut(s) 123, 208
BceAI ACGGC 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 28, 311, 494
BfaI CTAG 2 cut(s) 413, 691
BisI GCNGC 3 cut(s) 437, 502, 576
BlsI GCNGC 3 cut(s) 438, 503, 577
BmeT110I CYCGRG 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 257, 387
BpiI GAAGAC 1 cut(s) 588
Bpu10I CCTNAGC 2 cut(s) 35, 143
BsaAI YACGTR 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 543
BseMII CTCAG 4 cut(s) 5, 26, 39, 417
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 423, 488
Bsh1236I CGCG 2 cut(s) 294, 304
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 336
BsmAI GTCTC 3 cut(s) 28, 311, 494
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 1 cut(s) 542
Bso31I GGTCTC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 336
Bsp143I GATC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 2 cut(s) 176, 575
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 4 cut(s) 6, 27, 38, 418
BspFNI CGCG 2 cut(s) 294, 304
BspLI GGNNCC 2 cut(s) 257, 387
BspPI GGATC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 494
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 10, 345
BstDEI CTNAG 6 cut(s) 14, 25, 35, 46, 143, 426
BstDSI CCRYGG 1 cut(s) 543
BstFNI CGCG 2 cut(s) 294, 304
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 3 cut(s) 28, 311, 494
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 408, 539
BstNSI RCATGY 1 cut(s) 347
BstUI CGCG 2 cut(s) 294, 304
BstV1I GCAGC 2 cut(s) 423, 488
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 543
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 10, 345
CseI GACGC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 256, 633, 658
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 6 cut(s) 260, 344, 447, 519, 544, 630
CviQI GTAC 3 cut(s) 256, 633, 658
DdeI CTNAG 6 cut(s) 14, 25, 35, 46, 143, 426
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 600
Eco72I CACGTG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 6 cut(s) 263, 347, 450, 522, 547, 633
FatI CATG 6 cut(s) 259, 343, 446, 518, 543, 629
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 437, 502, 576
Fsp4HI GCNGC 3 cut(s) 437, 502, 576
FspBI CTAG 2 cut(s) 413, 691
GluI GCNGC 3 cut(s) 437, 502, 576
HaeIII GGCC 1 cut(s) 542
HgaI GACGC 1 cut(s) 293
Hin1II CATG 6 cut(s) 263, 347, 450, 522, 547, 633
HinfI GANTC 4 cut(s) 96, 268, 280, 668
HphI GGTGA 2 cut(s) 165, 175
Hpy166II GTNNAC 3 cut(s) 460, 550, 688
Hpy188I TCNGA 3 cut(s) 95, 315, 427
Hpy188III TCNNGA 2 cut(s) 213, 609
Hpy8I GTNNAC 3 cut(s) 460, 550, 688
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 5 cut(s) 110, 115, 121, 196, 366
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 2 cut(s) 391, 552
HpyCH4V TGCA 5 cut(s) 275, 343, 347, 439, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 539
HpyF3I CTNAG 6 cut(s) 14, 25, 35, 46, 143, 426
HpySE526I ACGT 2 cut(s) 391, 552
Hsp92II CATG 6 cut(s) 263, 347, 450, 522, 547, 633
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 4 cut(s) 26, 47, 198, 549
Lsp1109I GCAGC 2 cut(s) 423, 488
MaeI CTAG 2 cut(s) 413, 691
MaeII ACGT 2 cut(s) 391, 552
MaeIII GTNAC 2 cut(s) 277, 669
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 328, 593
MflI RGATCY 1 cut(s) 215
MluCI AATT 6 cut(s) 152, 166, 229, 478, 505, 526
MlyI GAGTC 3 cut(s) 90, 274, 677
MnlI CCTC 5 cut(s) 48, 75, 181, 294, 363
MvnI CGCG 2 cut(s) 294, 304
MwoI GCNNNNNNNGC 2 cut(s) 408, 539
NcoI CCATGG 1 cut(s) 543
NdeII GATC 1 cut(s) 215
NlaIII CATG 6 cut(s) 263, 347, 450, 522, 547, 633
NlaIV GGNNCC 2 cut(s) 257, 387
NmuCI GTSAC 2 cut(s) 277, 669
NspI RCATGY 1 cut(s) 347
PaeI GCATGC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 438, 503, 577
PleI GAGTC 3 cut(s) 90, 274, 676
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 3 cut(s) 90, 274, 676
Ppu21I YACGTR 1 cut(s) 392
PspCI CACGTG 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 257, 387
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 3 cut(s) 257, 634, 659
RsaNI GTAC 3 cut(s) 256, 633, 658
SatI GCNGC 3 cut(s) 437, 502, 576
Sau3AI GATC 1 cut(s) 215
SchI GAGTC 3 cut(s) 90, 274, 677
SphI GCATGC 1 cut(s) 347
Sse9I AATT 6 cut(s) 152, 166, 229, 478, 505, 526
SsiI CCGC 2 cut(s) 176, 575
SspMI CTAG 2 cut(s) 413, 691
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 2 cut(s) 394, 555
TasI AATT 6 cut(s) 152, 166, 229, 478, 505, 526
TatI WGTACW 2 cut(s) 632, 657
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 277, 669
TseI GCWGC 2 cut(s) 436, 501
Tsp45I GTSAC 2 cut(s) 277, 669
TspDTI ATGAA 2 cut(s) 394, 539
TspRI CASTG 1 cut(s) 282
XapI RAATTY 3 cut(s) 152, 229, 526
XceI RCATGY 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 413, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.